HAU0362, HAU0362 (genetic_marker) gossypium spp

Marker Overview
NameHAU0362
Genbank IDBF271385
TypeSSR
SpeciesGossypium spp.
Source SequenceBF271385
Source TypeEST
Repeat Motif(AGA)7
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0362_F: CTTGATGAGCAAGACACAGC
Primer 2HAU0362_R: ACAGGCTCTTCATTTTCTGG
Product Length181
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF271385
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:65439779..65439960 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:119586315..119586496 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:61624993..61625174 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:114593876..114594057 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:57737689..57737870 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:124624703..124624884 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016621.1chromosomeCM016621.1:5656251..5656435 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:11010829..11011010 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:52807865..52808046 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:62188452..62188633 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:99695829..99696010 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:64576929..64577110 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:118100226..118100407 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:64983974..64984155 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:120755450..120755631 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:64432014..64432195 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:120937916..120938097 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:61722864..61723045 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:116665510..116665691 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:64571476..64571657 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9126supercontigscaffold9126:20631..20812 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20537supercontigscaffold20537:120943..121124 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:61739939..61740120 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:115253730..115253911 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:63552918..63553099 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:116229373..116229554 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:63359237..63359418 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:114839865..114840046 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:65471518..65471699 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:124336183..124336364 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:62065530..62065711 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:115419540..115419721 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:65217992..65218173 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:122834329..122834510 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:127124928..127125109 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:128074911..128075092 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:58649700..58649881 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:99769137..99769318 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:60166948..60167129 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:45458519..45458697 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:42413563..42413741 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:62519893..62520074 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:39792768..39793022 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:33600278..33600456 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:40848003..40848181 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:117377248..117377429 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:100774716..100774897 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:5760399..5760581 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BF271385BF271385Gossypium spp.sequence_feature


Sequence
>HAU0362 ID=HAU0362; Name=HAU0362; organism=Gossypium spp.; type=genetic_marker; length=181bp
CTTGATGAGCAAGACACAGCCCCAAGGAAGAAGAAAAAGGTCGATGTCGA
ACCTCAGGAGGAGGAAGCAGCAGAAGTGGCTGCTATTGAAGATNAAAAAG
AGAAGAAGAAGAAAAGAAGAAAGCTGATCAGGAAGCAAGTTTGCCAATTA
GTGGGAACGAACCAGAAAATGAAGAGCCTGT