g.arboreum_cottongen_reftransV1_0017271, g.arboreum_cottongen_reftransV1_0017271 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0B0MRL0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26745 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 2.703e-36 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 2 Query: 125 MRLKVRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454 MRLKVRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPFNGA Sbjct: 1 MRLKVRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPFNGA 110
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0D2Q3N5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G239100 PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.089e-35 Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 2 Query: 125 MRLKVRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454 MRLKVRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPP NGA Sbjct: 1 MRLKVRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPSNGA 110
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0D2M2F0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G239100 PE=4 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 8.256e-33 Identity = 108/115 (93.91%), Postives = 109/115 (94.78%), Query Frame = 2 Query: 125 MRLK-----VRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454 MRLK +RFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPP NGA Sbjct: 1 MRLKGSPSLIRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPSNGA 115
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0D2QV52_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G239100 PE=4 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.142e-25 Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 2 Query: 164 MRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454 MRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPP NGA Sbjct: 1 MRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPSNGA 97
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: B9IJX4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11900g PE=4 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 4.240e-22 Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = 2 Query: 155 STKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436 +++MRKRQVV+RR E P SST SS T R+V+Y ECQKNHAAGVGGYAVDGCREFMASGEEGT AALTCAACGCHRNFHRREVETEVACDCSSP Sbjct: 58 TSQMRKRQVVVRRSEEPSRSSTTSSFTIRNVKYGECQKNHAAGVGGYAVDGCREFMASGEEGTAAALTCAACGCHRNFHRREVETEVACDCSSP 151
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A061EGD2_THECC (Mini zinc finger 2 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_018545 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.902e-22 Identity = 84/115 (73.04%), Postives = 92/115 (80.00%), Query Frame = 2 Query: 110 GYGQYMRLKVRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454 G+G K FG+R MRKRQVV+RREEPPRS++ +S Y ECQKNHAAGVGGYAVDGCREFMASGEEGT+AALTCAACGCHRNFHRREVETEV C+CSSPP NGA Sbjct: 29 GFGAEGGDKEEFGDRG--MRKRQVVVRREEPPRSTTNSSLTIRSVR-YGECQKNHAAGVGGYAVDGCREFMASGEEGTSAALTCAACGCHRNFHRREVETEVVCECSSPPS-NGA 139
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A061EEU8_THECC (Mini zinc finger 2 isoform 1 OS=Theobroma cacao GN=TCM_018545 PE=4 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 9.817e-22 Identity = 84/115 (73.04%), Postives = 92/115 (80.00%), Query Frame = 2 Query: 110 GYGQYMRLKVRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454 G+G K FG+R MRKRQVV+RREEPPRS++ +S Y ECQKNHAAGVGGYAVDGCREFMASGEEGT+AALTCAACGCHRNFHRREVETEV C+CSSPP NGA Sbjct: 26 GFGAEGGDKEEFGDRG--MRKRQVVVRREEPPRSTTNSSLTIRSVR-YGECQKNHAAGVGGYAVDGCREFMASGEEGTSAALTCAACGCHRNFHRREVETEVVCECSSPPS-NGA 136
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0A0KVJ7_CUCSA (Transcription factor OS=Cucumis sativus GN=Csa_5G636500 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.194e-20 Identity = 75/92 (81.52%), Postives = 77/92 (83.70%), Query Frame = 2 Query: 164 MRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPP 439 MRKRQVVLRR E S SS T RSVRY ECQKNHAAGVGGYAVDGCREFMASG+EGTTA LTCAACGCHRNFHRR+V TEV CDCSS P Sbjct: 1 MRKRQVVLRRSEESSRDSVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAGLTCAACGCHRNFHRRQVGTEVVCDCSSSP 92
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: V4T4C3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012891mg PE=4 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.099e-19 Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 2 Query: 155 STKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436 ++KMRKRQVVLRREEP R+S+ +S YAECQKNHAAGVGGYAVDGCREFMASGEEGT AALTCAACGCHR+FHRREV+TEV C+CSSP Sbjct: 86 TSKMRKRQVVLRREEPSRNSTASSVTVRSVR-YAECQKNHAAGVGGYAVDGCREFMASGEEGTAAALTCAACGCHRSFHRREVDTEVVCECSSP 178
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A067JT59_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19845 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.922e-19 Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 2 Query: 164 MRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436 MRKRQVV+RR E P SS+ SS T RSV+Y ECQKNHAA VGGYAVDGCREFMASGEEGT+ ALTCAACGCHRNFHRREVETE+ CDCSSP Sbjct: 1 MRKRQVVVRRTEEPSRSSSTSSFTIRSVKYGECQKNHAANVGGYAVDGCREFMASGEEGTSLALTCAACGCHRNFHRREVETELVCDCSSP 91
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF2_ARATH (Mini zinc finger protein 2 OS=Arabidopsis thaliana GN=MIF2 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 7.103e-19 Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETEVACDCSSPP 439 Y ECQKNHAA VGGYAVDGCREFMAS E T A AACGCHR+FHRRE+ETEV CDC+SPP Sbjct: 33 YGECQKNHAAAVGGYAVDGCREFMASRGEEGTVAALTCAACGCHRSFHRREIETEVVCDCNSPP 96
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF1_ARATH (Mini zinc finger protein 1 OS=Arabidopsis thaliana GN=MIF1 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.848e-16 Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436 Y ECQKNHAA +GGYAVDGCREFMA+G EGT AL CAACGCHRNFHR+EV+TEV C+ S P Sbjct: 39 YVECQKNHAANIGGYAVDGCREFMAAGVEGTVDALRCAACGCHRNFHRKEVDTEVVCEYSPP 100
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF3_ARATH (Mini zinc finger protein 3 OS=Arabidopsis thaliana GN=MIF3 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.439e-15 Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFN 448 Y ECQKNHAA +GGYAVDGCREFMAS G ALTCAACGCHRNFHRREV+TEV C+ S P N Sbjct: 26 YVECQKNHAANIGGYAVDGCREFMAS---GGDDALTCAACGCHRNFHRREVDTEVVCEYSPPNANN 88
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF1_ORYSJ (Mini zinc finger protein 1 OS=Oryza sativa subsp. japonica GN=MIF1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 7.774e-14 Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433 Y ECQ+NHAA +GG+AVDGCREFMASG EGT AAL CAACGCHR+FHRREVE A CDCSS Sbjct: 35 YRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREVEAAAAECDCSS 96
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF1_ORYSI (Mini zinc finger protein 1 OS=Oryza sativa subsp. indica GN=MIF1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 7.774e-14 Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433 Y ECQ+NHAA +GG+AVDGCREFMASG EGT AAL CAACGCHR+FHRREVE A CDCSS Sbjct: 35 YRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREVEAAAAECDCSS 96
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF2_ORYSJ (Mini zinc finger protein 2 OS=Oryza sativa subsp. japonica GN=MIF2 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.282e-13 Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433 Y ECQ+NHAA +GG+AVDGCREFMASG +GT AAL CAACGCH++FHRREVE A CDCSS Sbjct: 35 YRECQRNHAASIGGHAVDGCREFMASGADGTAAALLCAACGCHQSFHRREVEAAAAECDCSS 96
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF2_ORYSI (Mini zinc finger protein 2 OS=Oryza sativa subsp. indica GN=MIF2 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.282e-13 Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433 Y ECQ+NHAA +GG+AVDGCREFMASG +GT AAL CAACGCH++FHRREVE A CDCSS Sbjct: 35 YRECQRNHAASIGGHAVDGCREFMASGADGTAAALLCAACGCHQSFHRREVEAAAAECDCSS 96
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD4_ARATH (Zinc-finger homeodomain protein 4 OS=Arabidopsis thaliana GN=ZHD4 PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.272e-9 Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436 Y EC KNHAA +GG A DGC EFM SGE+G+ ALTC+AC CHRNFHR+EVE E+A SP Sbjct: 90 YKECLKNHAAAMGGNATDGCGEFMPSGEDGSIEALTCSACNCHRNFHRKEVEGELAATAMSP 151
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD2_ORYSJ (Zinc-finger homeodomain protein 2 OS=Oryza sativa subsp. japonica GN=ZHD2 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 6.000e-9 Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436 Y EC KNHA G+GG+AVDGC EFMASGEEG+ AL CAACGCHRNFHR+E E+ + P Sbjct: 63 YRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKESESPTGVGPAEP 124
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD2_ORYSI (Zinc-finger homeodomain protein 2 OS=Oryza sativa subsp. indica GN=ZHD2 PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 6.000e-9 Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2 Query: 251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436 Y EC KNHA G+GG+AVDGC EFMASGEEG+ AL CAACGCHRNFHR+E E+ + P Sbjct: 63 YRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKESESPTGVGPAEP 124 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 19
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0017271 ID=g.arboreum_cottongen_reftransV1_0017271; Name=g.arboreum_cottongen_reftransV1_0017271; organism=Gossypium arboreum; type=contig; length=681bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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