g.arboreum_cottongen_reftransV1_0017271, g.arboreum_cottongen_reftransV1_0017271 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017271
Unique Nameg.arboreum_cottongen_reftransV1_0017271
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length681
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0017271:1..681 .
Chr1:140594834..140595641 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0B0MRL0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26745 PE=4 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.703e-36
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 2 
Query:  125 MRLKVRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454
            MRLKVRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPFNGA
Sbjct:    1 MRLKVRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPFNGA 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0D2Q3N5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G239100 PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.089e-35
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 2 
Query:  125 MRLKVRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454
            MRLKVRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPP NGA
Sbjct:    1 MRLKVRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPSNGA 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0D2M2F0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G239100 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.256e-33
Identity = 108/115 (93.91%), Postives = 109/115 (94.78%), Query Frame = 2 
Query:  125 MRLK-----VRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454
            MRLK     +RFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPP NGA
Sbjct:    1 MRLKGSPSLIRFGNRSTKMRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPSNGA 115
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0D2QV52_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G239100 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.142e-25
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 2 
Query:  164 MRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454
            MRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPP NGA
Sbjct:    1 MRKRQVVLRREEPPRSSSTNSSLTSRSVRYAECQKNHAAGVGGYAVDGCREFMASGEEGTTAALTCAACGCHRNFHRREVETEVACDCSSPPPSNGA 97
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: B9IJX4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11900g PE=4 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.240e-22
Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = 2 
Query:  155 STKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            +++MRKRQVV+RR E P  SST SS T R+V+Y ECQKNHAAGVGGYAVDGCREFMASGEEGT AALTCAACGCHRNFHRREVETEVACDCSSP
Sbjct:   58 TSQMRKRQVVVRRSEEPSRSSTTSSFTIRNVKYGECQKNHAAGVGGYAVDGCREFMASGEEGTAAALTCAACGCHRNFHRREVETEVACDCSSP 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A061EGD2_THECC (Mini zinc finger 2 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_018545 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.902e-22
Identity = 84/115 (73.04%), Postives = 92/115 (80.00%), Query Frame = 2 
Query:  110 GYGQYMRLKVRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454
            G+G     K  FG+R   MRKRQVV+RREEPPRS++ +S        Y ECQKNHAAGVGGYAVDGCREFMASGEEGT+AALTCAACGCHRNFHRREVETEV C+CSSPP  NGA
Sbjct:   29 GFGAEGGDKEEFGDRG--MRKRQVVVRREEPPRSTTNSSLTIRSVR-YGECQKNHAAGVGGYAVDGCREFMASGEEGTSAALTCAACGCHRNFHRREVETEVVCECSSPPS-NGA 139
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A061EEU8_THECC (Mini zinc finger 2 isoform 1 OS=Theobroma cacao GN=TCM_018545 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.817e-22
Identity = 84/115 (73.04%), Postives = 92/115 (80.00%), Query Frame = 2 
Query:  110 GYGQYMRLKVRFGNRSTKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFNGA 454
            G+G     K  FG+R   MRKRQVV+RREEPPRS++ +S        Y ECQKNHAAGVGGYAVDGCREFMASGEEGT+AALTCAACGCHRNFHRREVETEV C+CSSPP  NGA
Sbjct:   26 GFGAEGGDKEEFGDRG--MRKRQVVVRREEPPRSTTNSSLTIRSVR-YGECQKNHAAGVGGYAVDGCREFMASGEEGTSAALTCAACGCHRNFHRREVETEVVCECSSPPS-NGA 136
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A0A0KVJ7_CUCSA (Transcription factor OS=Cucumis sativus GN=Csa_5G636500 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.194e-20
Identity = 75/92 (81.52%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:  164 MRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPP 439
            MRKRQVVLRR E     S  SS T RSVRY ECQKNHAAGVGGYAVDGCREFMASG+EGTTA LTCAACGCHRNFHRR+V TEV CDCSS P
Sbjct:    1 MRKRQVVLRRSEESSRDSVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAGLTCAACGCHRNFHRRQVGTEVVCDCSSSP 92
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: V4T4C3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012891mg PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.099e-19
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 2 
Query:  155 STKMRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            ++KMRKRQVVLRREEP R+S+ +S        YAECQKNHAAGVGGYAVDGCREFMASGEEGT AALTCAACGCHR+FHRREV+TEV C+CSSP
Sbjct:   86 TSKMRKRQVVLRREEPSRNSTASSVTVRSVR-YAECQKNHAAGVGGYAVDGCREFMASGEEGTAAALTCAACGCHRSFHRREVDTEVVCECSSP 178
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Match: A0A067JT59_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19845 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.922e-19
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 2 
Query:  164 MRKRQVXXXXXXXXXXXXXXXXXXXXXXXYAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            MRKRQVV+RR E P  SS+ SS T RSV+Y ECQKNHAA VGGYAVDGCREFMASGEEGT+ ALTCAACGCHRNFHRREVETE+ CDCSSP
Sbjct:    1 MRKRQVVVRRTEEPSRSSSTSSFTIRSVKYGECQKNHAANVGGYAVDGCREFMASGEEGTSLALTCAACGCHRNFHRREVETELVCDCSSP 91
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF2_ARATH (Mini zinc finger protein 2 OS=Arabidopsis thaliana GN=MIF2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.103e-19
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXX-XXXXXHRNFHRREVETEVACDCSSPP 439
            Y ECQKNHAA VGGYAVDGCREFMAS  E  T A    AACGCHR+FHRRE+ETEV CDC+SPP
Sbjct:   33 YGECQKNHAAAVGGYAVDGCREFMASRGEEGTVAALTCAACGCHRSFHRREIETEVVCDCNSPP 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF1_ARATH (Mini zinc finger protein 1 OS=Arabidopsis thaliana GN=MIF1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.848e-16
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            Y ECQKNHAA +GGYAVDGCREFMA+G EGT  AL CAACGCHRNFHR+EV+TEV C+ S P
Sbjct:   39 YVECQKNHAANIGGYAVDGCREFMAAGVEGTVDALRCAACGCHRNFHRKEVDTEVVCEYSPP 100
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF3_ARATH (Mini zinc finger protein 3 OS=Arabidopsis thaliana GN=MIF3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.439e-15
Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSPPPFN 448
            Y ECQKNHAA +GGYAVDGCREFMAS   G   ALTCAACGCHRNFHRREV+TEV C+ S P   N
Sbjct:   26 YVECQKNHAANIGGYAVDGCREFMAS---GGDDALTCAACGCHRNFHRREVDTEVVCEYSPPNANN 88
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF1_ORYSJ (Mini zinc finger protein 1 OS=Oryza sativa subsp. japonica GN=MIF1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.774e-14
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433
            Y ECQ+NHAA +GG+AVDGCREFMASG EGT AAL CAACGCHR+FHRREVE   A CDCSS
Sbjct:   35 YRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREVEAAAAECDCSS 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF1_ORYSI (Mini zinc finger protein 1 OS=Oryza sativa subsp. indica GN=MIF1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.774e-14
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433
            Y ECQ+NHAA +GG+AVDGCREFMASG EGT AAL CAACGCHR+FHRREVE   A CDCSS
Sbjct:   35 YRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREVEAAAAECDCSS 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF2_ORYSJ (Mini zinc finger protein 2 OS=Oryza sativa subsp. japonica GN=MIF2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.282e-13
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433
            Y ECQ+NHAA +GG+AVDGCREFMASG +GT AAL CAACGCH++FHRREVE   A CDCSS
Sbjct:   35 YRECQRNHAASIGGHAVDGCREFMASGADGTAAALLCAACGCHQSFHRREVEAAAAECDCSS 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: MIF2_ORYSI (Mini zinc finger protein 2 OS=Oryza sativa subsp. indica GN=MIF2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.282e-13
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVA-CDCSS 433
            Y ECQ+NHAA +GG+AVDGCREFMASG +GT AAL CAACGCH++FHRREVE   A CDCSS
Sbjct:   35 YRECQRNHAASIGGHAVDGCREFMASGADGTAAALLCAACGCHQSFHRREVEAAAAECDCSS 96
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD4_ARATH (Zinc-finger homeodomain protein 4 OS=Arabidopsis thaliana GN=ZHD4 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.272e-9
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            Y EC KNHAA +GG A DGC EFM SGE+G+  ALTC+AC CHRNFHR+EVE E+A    SP
Sbjct:   90 YKECLKNHAAAMGGNATDGCGEFMPSGEDGSIEALTCSACNCHRNFHRKEVEGELAATAMSP 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD2_ORYSJ (Zinc-finger homeodomain protein 2 OS=Oryza sativa subsp. japonica GN=ZHD2 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.000e-9
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            Y EC KNHA G+GG+AVDGC EFMASGEEG+  AL CAACGCHRNFHR+E E+      + P
Sbjct:   63 YRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKESESPTGVGPAEP 124
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Match: ZHD2_ORYSI (Zinc-finger homeodomain protein 2 OS=Oryza sativa subsp. indica GN=ZHD2 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.000e-9
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:  251 YAECQKNHAAGVGGYAVDGCREFMASXXXXXXXXXXXXXXXXHRNFHRREVETEVACDCSSP 436
            Y EC KNHA G+GG+AVDGC EFMASGEEG+  AL CAACGCHRNFHR+E E+      + P
Sbjct:   63 YRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKESESPTGVGPAEP 124
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MRL0_GOSAR2.703e-36100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2Q3N5_GOSRA3.089e-3599.09Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2M2F0_GOSRA8.256e-3393.91Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QV52_GOSRA3.142e-2598.97Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9IJX4_POPTR4.240e-2284.04Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A061EGD2_THECC7.902e-2273.04Mini zinc finger 2 isoform 2 (Fragment) OS=Theobro... [more]
A0A061EEU8_THECC9.817e-2273.04Mini zinc finger 2 isoform 1 OS=Theobroma cacao GN... [more]
A0A0A0KVJ7_CUCSA6.194e-2081.52Transcription factor OS=Cucumis sativus GN=Csa_5G6... [more]
V4T4C3_9ROSI1.099e-1978.72Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067JT59_JATCU2.922e-1982.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0017271 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MIF2_ARATH7.103e-1976.56Mini zinc finger protein 2 OS=Arabidopsis thaliana... [more]
MIF1_ARATH3.848e-1677.42Mini zinc finger protein 1 OS=Arabidopsis thaliana... [more]
MIF3_ARATH1.439e-1574.24Mini zinc finger protein 3 OS=Arabidopsis thaliana... [more]
MIF1_ORYSJ7.774e-1479.03Mini zinc finger protein 1 OS=Oryza sativa subsp. ... [more]
MIF1_ORYSI7.774e-1479.03Mini zinc finger protein 1 OS=Oryza sativa subsp. ... [more]
MIF2_ORYSJ3.282e-1375.81Mini zinc finger protein 2 OS=Oryza sativa subsp. ... [more]
MIF2_ORYSI3.282e-1375.81Mini zinc finger protein 2 OS=Oryza sativa subsp. ... [more]
ZHD4_ARATH1.272e-966.13Zinc-finger homeodomain protein 4 OS=Arabidopsis t... [more]
ZHD2_ORYSJ6.000e-966.13Zinc-finger homeodomain protein 2 OS=Oryza sativa ... [more]
ZHD2_ORYSI6.000e-966.13Zinc-finger homeodomain protein 2 OS=Oryza sativa ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainPFAMPF04770ZF-HD_dimercoord: 41..93
e-value: 1.2E-30
score: 105.4
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainTIGRFAMTIGR01566TIGR01566coord: 42..93
e-value: 1.0E-27
score: 94.3
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainPRODOMPD125774coord: 43..105
e-value: 8.0E-17
score: 207.0
IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domainPROSITEPS51523ZF_HD_DIMERcoord: 43..92
score: 26.346
NoneNo IPR availablePANTHERPTHR31948:SF12MINI ZINC FINGER PROTEIN 2coord: 11..105
NoneNo IPR availablePANTHERPTHR31948FAMILY NOT NAMEDcoord: 11..105

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017271 ID=g.arboreum_cottongen_reftransV1_0017271; Name=g.arboreum_cottongen_reftransV1_0017271; organism=Gossypium arboreum; type=contig; length=681bp
TTCACAACGACCAGTCTAGGGTTTACTATTGAGAAATTAAATAAGAACAA
ATCAGAAATACCCATTCTCAAGTAAGAAGCTATGCTATAAATATGTAATT
TAGGGTTAGGGCTATGGCCAATACATGAGACTAAAAGTACGATTTGGGAA
TCGATCGACGAAAATGAGGAAGCGACAAGTGGTACTGAGAAGGGAGGAGC
CACCAAGAAGCAGCAGCACCAATTCATCGTTGACAAGTAGAAGTGTGAGA
TATGCAGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGTTATGCTGT
TGATGGGTGCCGGGAATTCATGGCCAGCGGTGAAGAAGGAACAACTGCAG
CCCTTACTTGTGCTGCTTGCGGCTGCCATAGGAATTTCCATAGAAGGGAA
GTTGAAACTGAGGTAGCTTGTGACTGTTCATCACCTCCTCCTTTCAATGG
AGCATAATATATATGTAGCTTTATTAAATAAAATCACTTCTCATGTTTGT
ATAAATGGAAGGCTTTAATCATGTAATCTACCTATATATTTGCATTCTGC
TTATATATATATATGTTTCTTGAAAGAATGGGTTTCTTTCATAGCTTGTT
TTTCTATTATATTAAAAGATCAAAAGTATTTGTATTCATGTTTGGTTTTA
TGAAGAAATTAATGGGTGTTTTCTTCCATGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006456ZF_HD_homeobox_Cys/His_dimer