g.arboreum_cottongen_reftransV1_0004217, g.arboreum_cottongen_reftransV1_0004217 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004217
Unique Nameg.arboreum_cottongen_reftransV1_0004217
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length938
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr8chromosomeg.arboreum_cottongen_reftransV1_0004217:1..938 .
Chr8:120629304..120630241 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A0D2S8A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G045000 PE=4 SV=1)

HSP 1 Score: 592.808 bits (1527), Expect = 0.000e+0
Identity = 298/303 (98.35%), Postives = 300/303 (99.01%), Query Frame = 2 
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSS+LSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQI NADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPA LIDRLADLDKC+AERALATIELLCRIPSGC AFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF
Sbjct:  114 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSDLSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQISNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPATLIDRLADLDKCDAERALATIELLCRIPSGCSAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 416
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A061E0Y0_THECC (Plant U-box 26 OS=Theobroma cacao GN=TCM_007082 PE=4 SV=1)

HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0
Identity = 259/305 (84.92%), Postives = 285/305 (93.44%), Query Frame = 2 
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGS--SELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            AS+VS+PFQ RLSALRRLKGLARDSDKNRSVISSH+ARE+LI+IVFSDTGS  SEL+ EALA+LVMFQL ESEC SI SD N+V+YLS++LFHSSIEVR+NSASLIE V++GTRS DLRAQI N DEIFEGV D+L+NLNSYPRAL+I +RALFALCLVKQTRHKAVQAGA   LIDRLADLDKC+AERALATIELLCRIPSGC AFAAHALTVPLLVKTILKISDRATE++AGAL+ALCSESE SQR+AVSAG+LTQLLLLVQSDCT+RAKRKAQ LLKLLRDSWPEDSIGNSDDFACSE+VPF
Sbjct:  112 ASSVSNPFQSRLSALRRLKGLARDSDKNRSVISSHNAREILINIVFSDTGSGSSELNQEALALLVMFQLTESECASIASDSNKVIYLSKLLFHSSIEVRVNSASLIEIVVAGTRSSDLRAQISNVDEIFEGVTDLLKNLNSYPRALKISIRALFALCLVKQTRHKAVQAGAAETLIDRLADLDKCDAERALATIELLCRIPSGCSAFAAHALTVPLLVKTILKISDRATEHSAGALVALCSESEQSQRDAVSAGILTQLLLLVQSDCTDRAKRKAQTLLKLLRDSWPEDSIGNSDDFACSEVVPF 416
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A0D2PYI4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G237200 PE=4 SV=1)

HSP 1 Score: 486.878 bits (1252), Expect = 1.771e-168
Identity = 256/305 (83.93%), Postives = 278/305 (91.15%), Query Frame = 2 
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSD--TGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            AS VS+PF  R SAL RLKGLAR+S+KNR+VI SH+ARE+L+ I+FSD  +GSSELS EALAVLVMFQL ESEC  IGSD NRVVYLS +LFHSSIEVR+NSASLIE VL+G RS DLRA+ICN DEIF GV DIL+NL+SYPRALRIGVRALFALCL+KQTRHKAVQAGA   LIDRL DLDKC+AERALATIELLCRIPSGC AFA+HALTVPLLVKTIL+ISDRATEYAAGALMALCSESE SQ++AVSAGVLTQLLLLVQSDCT+RAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF
Sbjct:  112 ASTVSNPFSVRHSALVRLKGLARESEKNRNVICSHEAREILMRILFSDVSSGSSELSQEALAVLVMFQLTESECTGIGSDSNRVVYLSELLFHSSIEVRVNSASLIETVLAGMRSSDLRAEICNVDEIFAGVTDILKNLSSYPRALRIGVRALFALCLLKQTRHKAVQAGAAETLIDRLTDLDKCDAERALATIELLCRIPSGCSAFASHALTVPLLVKTILRISDRATEYAAGALMALCSESEQSQKDAVSAGVLTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 416
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: B9HS21_POPTR (U-box domain-containing family protein OS=Populus trichocarpa GN=POPTR_0009s10310g PE=4 SV=1)

HSP 1 Score: 464.151 bits (1193), Expect = 1.451e-159
Identity = 229/303 (75.58%), Postives = 266/303 (87.79%), Query Frame = 2 
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            A++ S+P   RLSALRRL+GLARDSDKNRSVISSH+ REVL+++VFS + SS+LS E+LA+LV+F L E +C  I S+P R+ YL+ +LFHSSIEVR+NSA+LIENV++GTRS DLR QI N + IFEGV++IL+N  S PRAL+IG++ALFALCLVKQTRHKAV AGA   LIDRLAD DKC+AERALATIELLCRI  GC AFAAHALTVPLLVKTILKISDRATEYAAGAL+ALCS SE SQ+EAV AG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRD+WPEDS+GNSDDF CSE+VPF
Sbjct:  111 AASASNPTHSRLSALRRLRGLARDSDKNRSVISSHNVREVLVNLVFSTSQSSDLSHESLAILVLFPLTEFDCVGISSEPERISYLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNTEIIFEGVIEILKNPLSSPRALKIGIKALFALCLVKQTRHKAVTAGAAETLIDRLADFDKCDAERALATIELLCRIQVGCAAFAAHALTVPLLVKTILKISDRATEYAAGALLALCSASELSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDAWPEDSVGNSDDFLCSEVVPF 413
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A9PAR6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 463.766 bits (1192), Expect = 1.727e-159
Identity = 229/303 (75.58%), Postives = 266/303 (87.79%), Query Frame = 2 
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            A++ S+P   RLSALRRL+GLARDSDKNRSVISSH+ REVL+++VFS + SS+LS E+LA+LV+F L E +C  I S+P R+ YL+ +LFHSSIEVR+NSA+LIENV++GTRS DLR QI N + IFEGV++IL+N  S PRAL+IG++ALFALCLVKQTRHKAV AGA   LIDRLAD DKC+AERALATIELLCRI  GC AFAAHALTVPLLVKTILKISDRATEYAAGAL+ALCS SE SQ+EAV AG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRD+WPEDS+GNSDDF CSE+VPF
Sbjct:  111 AASASNPTHSRLSALRRLRGLARDSDKNRSVISSHNVREVLVNLVFSTSQSSDLSHESLAILVLFPLTEFDCVGISSEPERISYLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNTEIIFEGVIEILKNPLSSPRALKIGIKALFALCLVKQTRHKAVTAGAAETLIDRLADFDKCDAERALATIELLCRIQVGCAAFAAHALTVPLLVKTILKISDRATEYAAGALLALCSASELSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDAWPEDSVGNSDDFLCSEVVPF 413
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A067KJ43_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14786 PE=4 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 4.015e-159
Identity = 230/306 (75.16%), Postives = 269/306 (87.91%), Query Frame = 2 
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVF---SDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            AS+ S+ +Q RLSALRRL+GLARDSDKNRSVISSH+AREV I++VF   +D+ SS+L+ EALA+L+MF L+ES+C  I SD  R+ YL  +LFH SIEVR+NSA+LIE V++GT+S DLRAQI + DEIFEGV+++L+N  SYPRAL+IG++ALFALCLVKQTRHKAV AGA  +LIDRLAD DKC+AERALATIELLCR+P+GC AFA HALTVPLLVK ILKISDRATEYAAGAL+ALC+ SE SQREAVSAG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRDSWPEDS  NSDDF CSE+VPF
Sbjct:  111 ASSESNLYQSRLSALRRLRGLARDSDKNRSVISSHNAREVFINLVFANCTDSNSSDLNHEALALLIMFPLSESDCVCIASDSGRINYLVNLLFHISIEVRVNSAALIEIVVAGTKSSDLRAQISSVDEIFEGVIEMLKNPISYPRALKIGIKALFALCLVKQTRHKAVSAGAADILIDRLADFDKCDAERALATIELLCRVPTGCTAFAGHALTVPLLVKKILKISDRATEYAAGALLALCTSSEQSQREAVSAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSSANSDDFICSEVVPF 416
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: B9N4Z3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s14720g PE=4 SV=1)

HSP 1 Score: 460.299 bits (1183), Expect = 5.120e-158
Identity = 229/303 (75.58%), Postives = 263/303 (86.80%), Query Frame = 2 
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            A++ S+P   RLSALRRL+GLARDSDKNRS+ISSH+ RE+L+++VFS + S ELS E+LA+LVMF L E +C +I SDP R+  L+ +LFHSSIEVR+NSA+LIENV++GTRS DLR QI N + IFEGV+DIL+N  S PRAL+IG++ LFALCLVKQTRHKAV AGA   LIDRLADLDKC+AERALATIELLCRI  GC AF AHALTVPLLVKTILKISDRATEYAAGAL+ALCS SE SQ+EAV AG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRDSWPEDS GNSDDF CSE+VPF
Sbjct:  111 AASESNPTHSRLSALRRLRGLARDSDKNRSLISSHNVREILVNLVFSSSQSLELSHESLAILVMFPLTEFDCVAIASDPERISCLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNMEIIFEGVIDILKNPLSSPRALKIGIKGLFALCLVKQTRHKAVSAGAAETLIDRLADLDKCDAERALATIELLCRIQVGCAAFVAHALTVPLLVKTILKISDRATEYAAGALLALCSASEQSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSAGNSDDFVCSEVVPF 413
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: W9S676_9ROSA (U-box domain-containing protein 26 OS=Morus notabilis GN=L484_027509 PE=4 SV=1)

HSP 1 Score: 457.988 bits (1177), Expect = 4.120e-157
Identity = 227/306 (74.18%), Postives = 273/306 (89.22%), Query Frame = 2 
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS--DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSE-IVPF 910
            AS+ S+P   RLSALRRL+GLARDSDKNRSVISS ++REVL+DIVF+   + SSELS EALAV VMF  +E EC ++ S+P+RV YL+R+LFHSSI+VR+NSA++IE V++GTR+P+LR+QI N DEIFEGV++ILR+  +YPRAL++G++ALFA+CLVKQTRHKA+ AGA  +LIDRLAD +KC+AERALAT+ELLCRIP+GC A AAHALTVPLLVK ILKISDRATEYAAGAL++LCS SE SQREAV+AG+LTQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWPEDSI NSDDFACSE +VPF
Sbjct:  111 ASSESTPAPTRLSALRRLRGLARDSDKNRSVISSLNSREVLLDIVFAGASSDSSELSREALAVAVMFPFSEIECAAVASEPDRVAYLTRLLFHSSIDVRVNSAAMIEIVVAGTRTPELRSQISNVDEIFEGVIEILRSPIAYPRALKVGIKALFAMCLVKQTRHKAIAAGAAEILIDRLADFEKCDAERALATVELLCRIPAGCSALAAHALTVPLLVKIILKISDRATEYAAGALVSLCSASEQSQREAVAAGILTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPEDSIRNSDDFACSEVVVPF 416
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: M5VJA2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006352mg PE=4 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 1.949e-146
Identity = 221/302 (73.18%), Postives = 268/302 (88.74%), Query Frame = 2 
Query:   14 SSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGS--SELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSE-IVPF 910
            S+P+  RLSALRRL+GLARD DKNRS ISS ++RE+L+ +VF+DTGS  SEL+ EALA+LV+F L ES+C ++ SDP+RV YL++++ HSS+EVR+NSA+LIENVL+G+R+ +LRA+I N DEI +GVV ILRN  +YPRAL+IG++ALFALCLVKQTR+KAV AGAP  LI+ LAD +KC++ERALATIELLCR+P GC AFAAHALTVPLLVKTILKISDRATEYAAGAL++LCS SE SQ +AV+AGVLTQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWPEDS+GNSDDF CSE +VPF
Sbjct:  115 SNPYPTRLSALRRLRGLARDLDKNRSTISSQNSREILVQLVFADTGSESSELTHEALALLVLFPLPESDCAAVASDPDRVAYLAQLVQHSSMEVRVNSAALIENVLAGSRTAELRAEISNVDEIHQGVVSILRNPIAYPRALKIGIKALFALCLVKQTRNKAVSAGAPETLINTLADFEKCDSERALATIELLCRVPDGCTAFAAHALTVPLLVKTILKISDRATEYAAGALLSLCSASEKSQNDAVAAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPEDSVGNSDDFVCSELVVPF 416
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A0A0L6F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G203270 PE=4 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 3.859e-143
Identity = 212/297 (71.38%), Postives = 255/297 (85.86%), Query Frame = 2 
Query:   41 ALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS------DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEI-VPF 910
            ALRRLKGLARDSDKNRS+ISS +ARE+L+D+VFS      D+ S +LS E+LA+LVM  L ESEC  + SDP R+ YLS +LF SSIE RIN+A+LIE V++GTR+ +LR QIC  DE+FEGVV+ILR+  +YPRAL++GV+ALFALCLVKQTRHKAV AGA  ++IDR  DL+K +AERALATIEL+CRIP+GC AFAAHALTVPLLVK ILKISDRATE A GAL++LCS SE ++REAV+AG+LTQLLLLVQSDCTER KRK+Q+LLKLLRDSWP++S+GNSDD+ACSEI VPF
Sbjct:  128 ALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSGSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEDRINAAALIETVIAGTRASELRTQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPF 424
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB26_ARATH (U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 3.469e-121
Identity = 187/298 (62.75%), Postives = 245/298 (82.21%), Query Frame = 2 
Query:   32 RLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEAL----AVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLA-DLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            R +A+RRL+GLARDS+KNR +I+ H+ARE+L+ I+F+D  ++ LS E +    A+LV+  + E+ECE++ SDP+RV +++R+LF SSIE+R+N+A+LIE VL+G +S DL+  I  +D IFEGV+D+L+N  S  RAL+IG++A+FALCLVKQTRH A+ AGAP +LIDRLA D D+C+ ER LAT+ELLCR+P GC AF  HALTVPL+VKTIL++SDRATEYAAGAL+ALC+  E  + EA +AG++TQLLLLVQSDCTERAKRKAQMLLKLLRDSWP+DS  +SDDF  SE+ PF
Sbjct:  124 RAAAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLVLLHMTETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGAKSMDLKLIISGSDSIFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTAEERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVHSDDFNRSEVAPF 421
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 1.519e-118
Identity = 190/297 (63.97%), Postives = 239/297 (80.47%), Query Frame = 2 
Query:   32 RLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNE-SECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLA-DLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPE-DSIGNSDDFAC-SEIVPF 910
            R +ALRRL+G ARDSDKNR +I++H+A E+LI I+FS+T SSEL  E+LA+LVM  + E ++  SI SDP RV +L+R+LF SSIE R+N+A+LIE V +GT+S DL+  I N++ +FEGV+D+LRN  S  RAL+IG++ LFALC VK TRH A+ AGAP +LIDRLA D D+C+ ERALAT+ELLCR P GC AF  HALTVPLLVKTIL++SDRATEYAAGAL+ALC+  E  + EA  AGV+ QLLL+VQS+CTERAK+KAQ LLKLLRDSWP+ +S  NSDDF C S++VPF
Sbjct:  125 RAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSESLALLVMLPITEPNQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLKGSISNSESVFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWREEAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPDYNSFANSDDFGCSSQVVPF 421
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB23_ARATH (E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.787e-18
Identity = 75/290 (25.86%), Postives = 147/290 (50.69%), Query Frame = 2 
Query:   14 SSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNR---VVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLAD----LDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMA---LCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSW 853
            +S  + ++  L+RL+ +  ++  N+  + +    E L +IV +D+ +  L+ EAL +L   + +E+  +++ ++      V  L++++     E R+ +  L++N+L      D    +    E+F  VV IL +  S  +A +  +  L  +C   + RHKAV+AG  +++I+ L D     ++   E A+  ++LLC+   G   F  H   + ++ K IL++S  A++ A   L++    C+ +     E +  GV+ +L L++Q  C  + K KA+ LLKL    W
Sbjct:  111 ASSHENQVKCLKRLRQIVSENATNKRCLEAAGVPEFLANIVSNDSENGSLTDEALNLLYHLETSETVLKNLLNNKKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVA---DPMQSMTLKPEVFTEVVQILDDRISQ-KATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLLSVGRFCA-TPALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKLHARVW 395
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB31_ARATH (U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.451e-17
Identity = 84/284 (29.58%), Postives = 143/284 (50.35%), Query Frame = 2 
Query:   35 LSALRRLKGLARD---SDKNRSVISSHDAREVLID--------IVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRA----LFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCS-ESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKL 838
            L  LR+ KG A+    S+  + V++   A++ ++D         + S   S  +  EA+A+LV  +L+ S+ ++    P RV  +  ML   SIE +IN A LI  ++        RA++ ++  +  G++ ++++     R  R GV      L ++ + KQ R+  V+ GA   L+D L  LD    E AL  ++ LC    G +A      T+P  V+ ++K+S++ T YA   L ++C   SE     AV  G+  +LLL++QS C    K+++  LLKL
Sbjct:  149 LGTLRKAKGKAKVHALSELKQVVMAHAIAKKTVVDEGGVFVISSLLSPFTSHAVGSEAIAILVNLELD-SDSKAGLMQPARVSLMVDMLNDGSIETKINCARLIGRLV---EEKGFRAELVSSHSLLVGLMRLVKD-----RRRRNGVSPALTLLKSVSVHKQVRNLLVRIGAVPQLVDVLPCLDVECLESALFVLDSLCLESEGRIALKDSVNTIPHTVRLLMKVSEKCTNYAISILWSVCKLASEECSSLAVEVGLAAKLLLVIQSGCDPALKQRSAELLKL 423
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB30_ARATH (U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.978e-16
Identity = 84/283 (29.68%), Postives = 139/283 (49.12%), Query Frame = 2 
Query:   35 LSALRRLKGLARD---SDKNRSVISSHDAREVLID-----IVFSDTG---SSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDIL---RNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCS-ESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKL 838
            L  L++ KG AR    S+  + VI+   AR+ +++     ++ S  G   S  +  E +A+LV   L+ S+ +S    P +V  +  ML   S E +IN A LI  ++        RA++ ++  +  G++ ++   R+ N    ALR+    L  + + KQ R   V  GA   L+D L  LD    E AL  ++ LC    G +A    A T+P  V+ ++++S+  T YA   L ++C    E     AV  G+  +LLL++QS C    K+++  LLKL
Sbjct:  153 LGTLKKAKGQARVHALSELKQIVIAHLMARKTVVEEGGVSVISSLLGPFTSHAVGSEVVAILVSLDLD-SDSKSGLMQPAKVSLIVDMLNDGSNETKINCARLIRGLV---EEKGFRAELVSSHSLLVGLMRLVKDKRHRNGVSPALRL----LKPISVHKQVRSLMVSIGAVPQLVDILPSLDPECLELALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVCKLAPEECSPLAVEVGLAAKLLLVIQSGCDAALKQRSAELLKL 427
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB22_ARATH (E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.129e-13
Identity = 54/170 (31.76%), Postives = 88/170 (51.76%), Query Frame = 2 
Query:  374 EIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAER-----ALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMA---LCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPE 859
            E+F  V+ IL +  S+ +A R  ++ L   C   + RHKAV+ G  +M+I+ L D D   +ER     A+  +++LC+   G   F  H   + ++ K IL++S   +E A   L++    C+     Q E +  GV+ +L L++Q  C  + K KA+ LLKL    W E
Sbjct:  255 ELFGEVIQILHDQISH-KATRSAMQILVITCPWGRNRHKAVEGGTISMIIELLMD-DTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVLLSVGRFCATPSLLQ-EMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKLHARVWRE 421
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.619e-13
Identity = 83/279 (29.75%), Postives = 137/279 (49.10%), Query Frame = 2 
Query:   14 SSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS-DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRD 847
            SS    +  A   L+ LA+ +  NR VI +  A  +L+++++S D+ + E    A+  L+   +N++  ++I +D   +  L  +L + S E + NSA+ +    S +   + + +I  +  I   +VD+L N    PR  +    ALF L + ++ +   VQ+GA   LID L D      ++A+A +  L  IP G  A       +PLLV+ +   S R  E AA AL+ L + S       +  G +  L+ L QS  T RA+ KAQ LL   R+
Sbjct:  552 SSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQE---NAVTALLNLSINDNNKKAI-ADAGAIEPLIHVLENGSSEAKENSAATL---FSLSVIEENKIKIGQSGAIGP-LVDLLGN--GTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLID-LMDPAAGMVDKAVAVLANLATIPEGRNAIGQEG-GIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQS-GTPRAREKAQALLSYFRN 817
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB12_ORYSJ (U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.472e-11
Identity = 81/275 (29.45%), Postives = 134/275 (48.73%), Query Frame = 2 
Query:   62 LARDSDKNRSVISSHDAREVLIDIVFS-DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNL--NSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSI-GN 874
            LA+ +  NR  I+   A  +L++++ S D  + E +V AL  L + + N++       D + +  +  +L   S+E R N+A+ +    S +   + +  I  A     G +  L NL  +  PR  +    A+F LC+ +  + +AV+AG    L++ L D      + AL+ + +L   P G +   A +  +P LV+ I   S R  E AA  L  LCS        A +AGV   L  L ++  T+RAKRKA  +L+L+  +  EDS+ GN
Sbjct:  350 LAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASI----VDSHAIPKIVEVLKTGSMETRENAAATL---FSLSVVDENKVTIGAA-----GAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVI-ARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETG-TDRAKRKASSILELMHQA-NEDSLKGN 609
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.803e-11
Identity = 76/278 (27.34%), Postives = 136/278 (48.92%), Query Frame = 2 
Query:   14 SSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIE-VRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLR 844
            SS    +  A  R++ LAR+S  NR VI+  +A   L+ +++S      +  +A+  L+   +N++  +S+ ++   +V L  +L    +E  + NSA+    + S +   + + +I  A  I E +VD+L + +   +  +    ALF L +  + + K ++AGA   L++ L D      E+A+  +  L  +  G +A       +P+LV+ +   S R  E A  AL+ LC+ S       +  GV+  L+ L +S  T R K KAQ LLK  +
Sbjct:  432 SSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYST--DERIQADAVTCLLNLSINDNN-KSLIAESGAIVPLIHVLKTGYLEEAKANSAA---TLFSLSVIEEYKTEIGEAGAI-EPLVDLLGSGSLSGK--KDAATALFNLSIHHENKTKVIEAGAVRYLVE-LMDPAFGMVEKAVVVLANLATVREGKIAIGEEG-GIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSG-TARGKEKAQNLLKYFK 697
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.354e-11
Identity = 75/279 (26.88%), Postives = 133/279 (47.67%), Query Frame = 2 
Query:   26 QP--RLSALRRLKGLARDSDKNRSVISSHDAREVLIDI--VFSDTGSSELSVEALAVLVMFQLNESE-CESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNL-----NSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLL 832
            QP  R SA   ++ LA+ ++ NR  I++  A  +L+++  + +D+ + E +V ++  L + Q N+ +   S G+ P  V  L +     S+E R N+A+ +               + + +++  G    +  L         R  +    ALF LC+ +  + KAV+AG   +L+  L + +    + +L+ + +L   P G     A A  VP+LV  I   S R  E +A  L+ LCS ++    EA   G++  LL+ +  + T+R KRKA  LL
Sbjct:  368 QPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQK----GSMEARENAAATL-----------FSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGA-ADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIM-DLLIEMAENGTDRGKRKAAQLL 629
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2S8A2_GOSRA0.000e+098.35Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E0Y0_THECC0.000e+084.92Plant U-box 26 OS=Theobroma cacao GN=TCM_007082 PE... [more]
A0A0D2PYI4_GOSRA1.771e-16883.93Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9HS21_POPTR1.451e-15975.58U-box domain-containing family protein OS=Populus ... [more]
A9PAR6_POPTR1.727e-15975.58Putative uncharacterized protein OS=Populus tricho... [more]
A0A067KJ43_JATCU4.015e-15975.16Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9N4Z3_POPTR5.120e-15875.58Uncharacterized protein OS=Populus trichocarpa GN=... [more]
W9S676_9ROSA4.120e-15774.18U-box domain-containing protein 26 OS=Morus notabi... [more]
M5VJA2_PRUPE1.949e-14673.18Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0A0L6F8_CUCSA3.859e-14371.38Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PUB26_ARATH3.469e-12162.75U-box domain-containing protein 26 OS=Arabidopsis ... [more]
PUB25_ARATH1.519e-11863.97U-box domain-containing protein 25 OS=Arabidopsis ... [more]
PUB23_ARATH4.787e-1825.86E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis t... [more]
PUB31_ARATH1.451e-1729.58U-box domain-containing protein 31 OS=Arabidopsis ... [more]
PUB30_ARATH3.978e-1629.68U-box domain-containing protein 30 OS=Arabidopsis ... [more]
PUB22_ARATH1.129e-1331.76E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis t... [more]
PUB4_ARATH6.619e-1329.75U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB12_ORYSJ5.472e-1129.45U-box domain-containing protein 12 OS=Oryza sativa... [more]
PUB2_ARATH6.803e-1127.34U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB12_ARATH9.354e-1126.88U-box domain-containing protein 12 OS=Arabidopsis ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 4..266
e-value: 4.7E-18
score: 64.2
NoneNo IPR availablePANTHERPTHR22849WDSAM1 PROTEINcoord: 1..289
NoneNo IPR availablePANTHERPTHR22849:SF52E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATEDcoord: 1..289
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 4..267

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004217 ID=g.arboreum_cottongen_reftransV1_0004217; Name=g.arboreum_cottongen_reftransV1_0004217; organism=Gossypium arboreum; type=contig; length=938bp
AGCTTCGGCGGTTTCCAGTCCGTTTCAGCCTCGTCTCTCGGCTCTGCGTC
GACTCAAGGGACTGGCAAGAGACTCGGATAAGAACCGGTCCGTTATTTCT
TCACATGACGCACGTGAGGTACTGATAGATATCGTGTTTTCGGATACAGG
CTCGTCGGAGTTGAGCGTGGAGGCGCTTGCGGTTTTAGTGATGTTTCAAC
TCAATGAATCCGAGTGCGAGTCGATTGGTTCGGATCCCAACAGAGTGGTC
TACCTGTCGCGTATGTTGTTCCATTCCTCAATCGAAGTACGAATTAACTC
GGCTTCACTCATCGAAAACGTTCTCTCCGGCACGAGATCGCCGGATCTTC
GAGCTCAGATATGCAATGCGGATGAGATCTTCGAAGGCGTCGTGGACATA
TTAAGGAACCTCAACTCTTATCCTCGCGCGCTGAGAATCGGCGTTCGGGC
TCTCTTCGCCTTGTGCTTAGTGAAGCAAACGAGGCACAAAGCCGTCCAAG
CCGGAGCGCCGGCGATGTTGATCGACCGGTTGGCCGATTTGGACAAGTGC
GAGGCCGAACGAGCTCTGGCGACGATAGAATTGTTGTGCCGGATCCCCTC
CGGGTGTTTGGCGTTCGCGGCGCACGCGCTGACTGTCCCGCTGCTGGTAA
AAACGATACTGAAGATCTCGGACAGGGCTACGGAGTACGCGGCGGGTGCA
CTGATGGCGCTGTGCTCGGAGTCGGAAGGGAGCCAGAGGGAGGCGGTGAG
CGCGGGGGTTCTGACACAGCTGCTATTGCTGGTTCAAAGTGATTGTACGG
AGAGGGCGAAGAGGAAGGCCCAAATGCTTCTTAAGTTGCTTCGGGATTCG
TGGCCCGAAGATTCCATCGGCAATTCGGATGATTTTGCTTGCAGTGAAAT
CGTACCCTTTTGACCATCCCTCTCGCCTCACACCGAAA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding