CIR_Contig00807bb-Contig1:571 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00807bb-Contig1:571
AliasContig807bb-contig1:571
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGTTAAGTCTGGTCGCTTGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATT
3' Flanking SequenceGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTAT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:25837748..25837868 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00026052_CRI-A2_v1.0.a1chromosometig00026052_CRI-A2_v1.0.a1:85883..86002 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr4chromosomeDt_chr4:6210748..6210868 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:38453166..38453285 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:80646360..80646479 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3975_D04supercontigscaffold3975_D04:60138..60258 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:32895387..32895506 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold12226_objsupercontigscaffold12226_obj:1779..1898 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:34155078..34155198 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:42630272..42630391 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:30821151..30821271 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold2071supercontigScaffold2071:42269..42388 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold1588supercontigScaffold1588:4474..4593 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:34556182..34556302 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
scaffold30261_objsupercontigscaffold30261_obj:1165..1284 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017652.1chromosomeCM017652.1:28697657..28697777 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:26872000..26872120 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:29615958..29616077 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:27271911..27272030 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Contig00001chromosomeContig00001:373929..374048 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Contig00038chromosomeContig00038:100715..100834 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00807bb-Contig1:571 ID=CIR_Contig00807bb-Contig1:571; Name=CIR_Contig00807bb-Contig1:571; organism=Gossypium spp.; type=genetic_marker; length=125bp
TGTTAAGTCTGGTCGCTTGGGCCGTTGTACCTTTTGATTATGGTATGGTA
TTGTCAGATT[T/C]GAACATAGGGCTACTTTATTTGTTTGCCATATCTT
CGCTAGGTGTTTATGGAATTATTAT