CIR_Contig00807bb-Contig1:1387 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00807bb-Contig1:1387
AliasContig807bb-contig1:1387
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTTCGCACCACTGATAGACTACTTAAGATTCAATTCAAAAAGGCCCTACTTAGCTTAGTTT
3' Flanking SequenceGAAAGCCTTTGTCATTGTCAGTCAACTAAGTAGGGCCTGAGGCCCCCTGCGAATCCGTAA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:41786432..41786552 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00026052_CRI-A2_v1.0.a1chromosometig00026052_CRI-A2_v1.0.a1:86701..86821 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr4chromosomeDt_chr4:6211566..6211686 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:80647178..80647298 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3975_D04supercontigscaffold3975_D04:61149..61269 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:83619209..83619329 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:32894568..32894688 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold12226_objsupercontigscaffold12226_obj:960..1080 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:34154260..34154380 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:30820333..30820453 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold2071supercontigScaffold2071:43087..43207 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold1588supercontigScaffold1588:3655..3775 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:45425954..45426074 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
scaffold30261_objsupercontigscaffold30261_obj:346..466 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:44638398..44638518 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:28698475..28698595 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:46174636..46174756 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:97203359..97203479 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D04chromosomeD04:29616771..29616891 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:27272729..27272849 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Contig00001chromosomeContig00001:374747..374867 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Contig00038chromosomeContig00038:101533..101653 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00807bb-Contig1:1387 ID=CIR_Contig00807bb-Contig1:1387; Name=CIR_Contig00807bb-Contig1:1387; organism=Gossypium spp.; type=genetic_marker; length=125bp
TTCGCACCACTGATAGACTACTTAAGATTCAATTCAAAAAGGCCCTACTT
AGCTTAGTTT[T/C]GAAAGCCTTTGTCATTGTCAGTCAACTAAGTAGGG
CCTGAGGCCCCCTGCGAATCCGTAA