CIR_Contig00727bb-Contig1:635 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00727bb-Contig1:635
AliasContig727bb-contig1:635
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTGGACAATTCCTTCATCAATTGTGAAACGAATCAAATCAAATTCCATTTCTTCTTAAATT
3' Flanking SequenceCTGGTGTGATTTTTCATTTCATTTTTCATCTGTTTTCATGATAGGTGACATGAATGAAAC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:6008397..6008517 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:59930299..59930419 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:6000697..6000817 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:4513588..4513708 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:6496647..6496767 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:6292238..6292358 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:6210368..6210488 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:6351772..6351892 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:6259692..6259812 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:6099841..6099961 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:6188933..6189053 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:6056493..6056613 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:6373849..6373969 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:6155128..6155248 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:6419231..6419351 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:57415310..57415430 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:6642707..6642825 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:5995891..5996011 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:5394483..5394603 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:5809832..5809952 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:6220952..6221072 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:5090762..5090882 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:5231172..5231292 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00727bb-Contig1:635 ID=CIR_Contig00727bb-Contig1:635; Name=CIR_Contig00727bb-Contig1:635; organism=Gossypium spp.; type=genetic_marker; length=125bp
TGGACAATTCCTTCATCAATTGTGAAACGAATCAAATCAAATTCCATTTC
TTCTTAAATT[A/G]CTGGTGTGATTTTTCATTTCATTTTTCATCTGTTT
TCATGATAGGTGACATGAATGAAAC