CIR_Contig00727bb-Contig1:574 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00727bb-Contig1:574
AliasContig727bb-contig1:574
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCATTGCCGCACTGTGGGATRCATTCGTTCGAATCTGGTAGTTTSRGKATCGAGATYGAAC
3' Flanking SequenceTGGACAATTCCTTCATCAATTGTGAAACGAATCAAATCAAATTCCATTTCTTCTTAAATT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:6008458..6008578 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:6644878..6644998 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:59930238..59930358 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:117721897..117722017 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:6000758..6000878 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:8250309..8250429 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:4513649..4513769 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:7541259..7541379 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:6496708..6496828 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:6271310..6271430 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:6292299..6292419 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:6849940..6850060 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:6210429..6210549 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:6533872..6533992 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:6351833..6351953 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:6726304..6726424 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:6259753..6259873 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:6900032..6900152 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:6099902..6100022 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:6446152..6446272 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:6188994..6189114 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:6659692..6659812 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:6056554..6056674 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:6851387..6851507 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:6373910..6374030 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:6900099..6900219 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:6155189..6155309 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:6717754..6717874 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:6419292..6419412 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:7018183..7018303 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:6848295..6848415 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:6607948..6608068 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:57415249..57415369 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:6642766..6642886 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:5995952..5996072 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:5394544..5394664 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:5809893..5810013 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:6221013..6221133 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:5090823..5090943 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:5231233..5231353 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr11chromosomeChr11:178509572..178509692 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00727bb-Contig1:574 ID=CIR_Contig00727bb-Contig1:574; Name=CIR_Contig00727bb-Contig1:574; organism=Gossypium spp.; type=genetic_marker; length=125bp
CATTGCCGCACTGTGGGATRCATTCGTTCGAATCTGGTAGTTTSRGKATC
GAGATYGAAC[T/C]TGGACAATTCCTTCATCAATTGTGAAACGAATCAA
ATCAAATTCCATTTCTTCTTAAATT