CIR_Contig00727bb-Contig1:574 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00727bb-Contig1:574
AliasContig727bb-contig1:574
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCATTGCCGCACTGTGGGATRCATTCGTTCGAATCTGGTAGTTTSRGKATCGAGATYGAAC
3' Flanking SequenceTGGACAATTCCTTCATCAATTGTGAAACGAATCAAATCAAATTCCATTTCTTCTTAAATT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018225.1chromosomeCM018225.1:6008458..6008578 -
CM018212.1chromosomeCM018212.1:6644878..6644998 -
D5_11chromosomeD5_11:59930238..59930358 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:117721897..117722017 +
D10_11chromosomeD10_11:6000758..6000878 -
CM016624.1chromosomeCM016624.1:8250309..8250429 -
Dt_chr7chromosomeDt_chr7:4513649..4513769 -
At_chr7chromosomeAt_chr7:7541259..7541379 -
D11chromosomeD11:6496708..6496828 -
A11chromosomeA11:6271310..6271430 -
Ghir_D11chromosomeGhir_D11:6292299..6292419 -
Ghir_A11chromosomeGhir_A11:6849940..6850060 -
D11chromosomeD11:6210429..6210549 -
A11chromosomeA11:6533872..6533992 -
D11chromosomeD11:6351833..6351953 -
A11chromosomeA11:6726304..6726424 -
D11chromosomeD11:6259753..6259873 -
A11chromosomeA11:6900032..6900152 -
Gbar_D11chromosomeGbar_D11:6099902..6100022 -
Gbar_A11chromosomeGbar_A11:6446152..6446272 -
D11chromosomeD11:6188994..6189114 -
A11chromosomeA11:6659692..6659812 -
CM017633.1chromosomeCM017633.1:6056554..6056674 -
CM017620.1chromosomeCM017620.1:6851387..6851507 -
CM017659.1chromosomeCM017659.1:6373910..6374030 -
CM017646.1chromosomeCM017646.1:6900099..6900219 -
CM017711.1chromosomeCM017711.1:6155189..6155309 -
CM017698.1chromosomeCM017698.1:6717754..6717874 -
D11chromosomeD11:6419292..6419412 -
A11chromosomeA11:7018183..7018303 -
Chr11chromosomeChr11:6848295..6848415 -
Chr11chromosomeChr11:6607948..6608068 -
Chr11chromosomeChr11:57415249..57415369 +
B_11chromosomeB_11:6642766..6642886 -
Chr07chromosomeChr07:5995952..5996072 -
chr07chromosomechr07:5394544..5394664 -
Chr_07chromosomeChr_07:5809893..5810013 -
Chr07chromosomeChr07:6221013..6221133 -
Chr07chromosomeChr07:5090823..5090943 -
Chr07chromosomeChr07:5231233..5231353 -
Chr11chromosomeChr11:178509572..178509692 +
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00727bb-Contig1:574 ID=CIR_Contig00727bb-Contig1:574; Name=CIR_Contig00727bb-Contig1:574; organism=Gossypium spp.; type=genetic_marker; length=125bp
CATTGCCGCACTGTGGGATRCATTCGTTCGAATCTGGTAGTTTSRGKATC
GAGATYGAAC[T/C]TGGACAATTCCTTCATCAATTGTGAAACGAATCAA
ATCAAATTCCATTTCTTCTTAAATT