CIR_Contig00350bb-Contig1:469 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00350bb-Contig1:469
AliasContig350bb-contig1:469
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceKGCATGTGTKGGTGCCTTYCCWGTAAGCAGTTCYAGAAGCAATAYACCRAAGCTGTARAC
3' Flanking SequenceTCRGCYTTTTGRGAAACYTTAYKWGYATCTGTTACYTCTGGAGCACGRTAGCCATCWACA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:75753760..75753879 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018225.1chromosomeCM018225.1:18305662..18305781 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:21790485..21790604 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:47859545..47859664 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:39848318..39848437 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:100994660..100994779 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:78701152..78701271 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr7chromosomeDt_chr7:19284193..19284312 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:16526701..16526820 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4556_D11supercontigscaffold4556_D11:33088..33207 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:22269072..22269191 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:22631481..22631600 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:46013093..46013212 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:18397454..18397573 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:21861125..21861244 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:79654976..79655095 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:18908504..18908623 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:22347918..22348037 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:18694465..18694584 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:22775152..22775271 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold2907_ERROPOS15385168supercontigScaffold2907_ERROPOS15385168:66819..66938 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D07chromosomeGbar_D07:44155389..44155508 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:75416907..75417026 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:44872294..44872413 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:77112557..77112676 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:21784091..21784210 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:22289691..22289810 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:81619630..81619749 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:22390393..22390512 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:77049714..77049833 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:19268021..19268140 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:23305078..23305197 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:45780707..45780826 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:18448824..18448943 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:15404454..15404573 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:23935893..23936012 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:12423740..12423859 -Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:24132233..24132351 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:29172560..29172679 +Gossypium longicalyx (F1) genome NSF_v1n/a
F11chromosomeF11:17422331..17422450 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:149696758..149696877 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00350bb-Contig1:469 ID=CIR_Contig00350bb-Contig1:469; Name=CIR_Contig00350bb-Contig1:469; organism=Gossypium spp.; type=genetic_marker; length=125bp
KGCATGTGTKGGTGCCTTYCCWGTAAGCAGTTCYAGAAGCAATAYACCRA
AGCTGTARAC[A/G]TCRGCYTTTTGRGAAACYTTAYKWGYATCTGTTAC
YTCTGGAGCACGRTAGCCATCWACA