CIR_Contig00350bb-Contig1:453 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00350bb-Contig1:453
AliasContig350bb-contig1:453
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCTTCCTCRTTYRWTAAKGCATGTGTKGGTGCCTTYCCWGTAAGCAGTTCYAGAAGCAATA
3' Flanking SequenceACCRAAGCTGTARACRTCRGCYTTTTGRGAAACYTTAYKWGYATCTGTTACYTCTGGAGC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:75753743..75753863 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:47859528..47859648 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:39848301..39848421 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:100994643..100994763 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:78701135..78701255 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold4556_D11supercontigscaffold4556_D11:33071..33191 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D07chromosomeD07:46013076..46013196 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:79654959..79655079 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Scaffold2907_ERROPOS15385168supercontigScaffold2907_ERROPOS15385168:66802..66922 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D07chromosomeGbar_D07:44155372..44155492 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:75416890..75417010 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:44872277..44872397 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:77112540..77112660 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017642.1chromosomeCM017642.1:81619613..81619733 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:44621775..44621895 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:77049697..77049817 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr01chromosomeChr01:23935876..23935996 +Gossypium gossypioides (D6) genome ISU_v1n/a
F11chromosomeF11:29172543..29172663 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00350bb-Contig1:453 ID=CIR_Contig00350bb-Contig1:453; Name=CIR_Contig00350bb-Contig1:453; organism=Gossypium spp.; type=genetic_marker; length=125bp
CTTCCTCRTTYRWTAAKGCATGTGTKGGTGCCTTYCCWGTAAGCAGTTCY
AGAAGCAATA[T/C]ACCRAAGCTGTARACRTCRGCYTTTTGRGAAACYT
TAYKWGYATCTGTTACYTCTGGAGC