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Marker Overview
| Name | CIR_Contig24216bb-contig1:730 |
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| Alias | Contig24216bb-contig1:730
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| dbSNP ID | N/A |
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| SNP Array ID | | TAMU_CottonSNP63K: | i52543Gb |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | ACGGAAGGAMACGTGGGAACACGTTGCTAAAATGCGCGTGGGATTGGCCAGGTATGATTC |
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| 3' Flanking Sequence | GCTGTGGTGGGGAGCAAGTTGTACGTGACAGAGGGGTGGACGTGGCCTTTCCTGTTTTCG |
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| Species | Gossypium spp. |
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| Germplasm | Guazuncho-2
VH8-4602
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| Source Type | cDNA |
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| Publication | [view all] |
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| Contact | Lacape, Jean Marc
Stelly, David M.
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| Comment | Data obtained from CIRAD, 2014 |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2012 | Lacape JM, Claverie M, Vidal RO, Carazzolle MF, Guimarães Pereira GA, Ruiz M, Pré M, Llewellyn D, Al-Ghazi Y, Jacobs J, Dereeper A, Huguet S, Giband M, Lanaud C. Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. PloS one. 2012; 7(11):e48855. |
| 2015 | Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Kumar Singh S, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM. Development of a 63K SNP Array for Cotton and High-Density Mapping of Intra- and Inter-Specific Populations of Gossypium spp. G3 (Bethesda, Md.). 2015 Apr 22. |
Sequence
>CIR_Contig24216bb-contig1:730 ID=CIR_Contig24216bb-contig1:730; Name=CIR_Contig24216bb-contig1:730; organism=Gossypium spp.; type=genetic_marker; length=125bp
ACGGAAGGAMACGTGGGAACACGTTGCTAAAATGCGCGTGGGATTGGCCA
GGTATGATTC[A/G]GCTGTGGTGGGGAGCAAGTTGTACGTGACAGAGGG
GTGGACGTGGCCTTTCCTGTTTTCG
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