CIR_Contig00023bb-Contig1:108 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00023bb-Contig1:108
AliasContig23bb-contig1:108
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTGGTACCATTGATTTGTATTGGATTGTGAGAGATGGTGGTCTCATGCTTCTTCTGTCACA
3' Flanking SequenceCTTCTTCTTACGAAAGAGAGCTTYGAGAGCTGTAAGATTCAGGTCTTCTGCATTGCGGAA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:6503485..6503605 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:8352552..8352672 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:50968884..50969004 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:14540701..14540820 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:97934891..97935011 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:24966972..24967092 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:3586899..3587019 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:40171316..40171436 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:6714309..6714429 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:8480771..8480891 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:6664209..6664329 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:8566316..8566436 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:6511850..6511970 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:8207918..8208038 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:6668998..6669118 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:8564772..8564892 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:6627911..6628031 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:8542886..8543006 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:6433126..6433246 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:8544736..8544856 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:6396113..6396233 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:8335960..8336080 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:6476149..6476269 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:8336786..8336906 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:6516360..6516480 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:8836871..8836991 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:6524728..6524848 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:8274094..8274214 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:6836630..6836750 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:8593012..8593132 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:8921928..8922048 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:8754500..8754620 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:6436878..6436998 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:9696796..9696916 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:6516501..6516621 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08_6443054chromosomechr08_6443054:630..750 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr08chromosomeChr08:6585525..6585645 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:4207333..4207453 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:5389103..5389222 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:9558598..9558718 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:7466669..7466789 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:145588790..145588909 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00023bb-Contig1:108 ID=CIR_Contig00023bb-Contig1:108; Name=CIR_Contig00023bb-Contig1:108; organism=Gossypium spp.; type=genetic_marker; length=125bp
TGGTACCATTGATTTGTATTGGATTGTGAGAGATGGTGGTCTCATGCTTC
TTCTGTCACA[A/G]CTTCTTCTTACGAAAGAGAGCTTYGAGAGCTGTAA
GATTCAGGTCTTCTGCATTGCGGAA