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Marker Overview
Name | UCD_Gh_M_000026 |
Alias | Tm1_Mira454_Contig_5887_766 Gh_M_000026 Gh_M_000026_Class_II
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dbSNP ID | N/A |
Type | SNP |
SNP Alleles | A/G |
5' Flanking Sequence | AATGGTCAGAAACTATACAACCCTTGATCAGTTCGAGCAGCCCTAACAAGCAGATTGCCA
CATCGCCTACTTCTTCAACTACTTCATCCTCTTCGTCCAC |
3' Flanking Sequence | TCATCGGTGGCTTCTCCAGTTTCTATTTGTTCAAAGCAGAAAATAATGGAGGTTGCATCA
GCTATTTCCGACGGTAAAACTGACGTCCTAAACGAGATCC |
Species | Gossypium hirsutum |
Germplasm | Acala Maxxa PD-1 Sealand 542 Fibermax 832 TM-1
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Source Type | RNA |
Publication | [view all] |
Contact | Ashrafi, Hamid
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Comment | class_II: Only SNPs with one homeo-SNP in a position on the contig outside of 100 bases window on each side of the putative SNP position |
Alignments
The following features are aligned
Publications
Year | Publication |
2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
Sequence
>UCD_Gh_M_000026 ID=UCD_Gh_M_000026; Name=UCD_Gh_M_000026; organism=Gossypium hirsutum; type=genetic_marker; length=205bp AATGGTCAGAAACTATACAACCCTTGATCAGTTCGAGCAGCCCTAACAAG CAGATTGCCACATCGCCTACTTCTTCAACTACTTCATCCTCTTCGTCCAC [A/G]TCATCGGTGGCTTCTCCAGTTTCTATTTGTTCAAAGCAGAAAATA ATGGAGGTTGCATCAGCTATTTCCGACGGTAAAACTGACGTCCTAAACGA GATCC
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