UCD_Gh_M_000014, UCD_Gh_M_000014 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000014
AliasGh_M_000014
Tm1_Mira454_Contig_3005_1444
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceATTAACCCCTTCATTAGTCGTTGTGGAAGTGAAGAAGAAAGGAGGGGAACGAGGAGAGTA TGAGGATTTTTGTAACAGGGAATTGAAACCCGGGTTAAAG
3' Flanking SequenceAATTAATGGTTGAGGAATCACAATCTTCTGCAGCAGCTTCACTTGCTACTTCATCATCAT ATTTACCTTCGGATACTGAATAGAAGAGAAAGGGGAAGAA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:3022728..3022928 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:59513745..59513945 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:61104947..61105147 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:24730029..24730229 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:2943293..2943493 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:3445140..3445340 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:3122661..3122861 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:3233783..3233983 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:3292719..3292919 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:3089531..3089731 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:3136501..3136701 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:3112411..3112611 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:3189630..3189830 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:3143378..3143578 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:3235359..3235559 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:2873530..2873730 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:98501563..98501763 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:2877266..2877466 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:2961943..2962143 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:2442894..2443094 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:3106439..3106639 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:2451190..2451390 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:2291920..2292120 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:3058186..3058386 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000014 ID=UCD_Gh_M_000014; Name=UCD_Gh_M_000014; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
ATTAACCCCTTCATTAGTCGTTGTGGAAGTGAAGAAGAAAGGAGGGGAAC
GAGGAGAGTATGAGGATTTTTGTAACAGGGAATTGAAACCCGGGTTAAAG
[A/G]AATTAATGGTTGAGGAATCACAATCTTCTGCAGCAGCTTCACTTG
CTACTTCATCATCATATTTACCTTCGGATACTGAATAGAAGAGAAAGGGG
AAGAA