UCD_Gh_M_000008, UCD_Gh_M_000008 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000008
AliasGh_M_000008
Tm1_Mira454_Contig_1300_992
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceCTAACGTAGACGTTAAGCGTGGGCCTCCAGGAATAATGGTCTCCGCTCGGTCCTGGCAAC AGACTGCTAATCGGGTATGCCGGTCCCATCCTGGCTCGCC
3' Flanking SequenceGTTCCTAAGAAAAATACAGCGCGCACTAAGCTAATTGTACCAGACAAGTTCGGAGCTGAT ACTCCTTTTTCGTCTCCAAACGGTGTATTGAATAGCAGAG
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:20175051..20175251 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:22509690..22509890 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:34049924..34050124 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:20645746..20645946 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:21467810..21468010 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:20052059..20052259 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:20880388..20880588 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:20628523..20628723 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:20247847..20248047 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:20178385..20178585 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:20661363..20661563 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:21328336..21328536 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:20598468..20598668 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:21037561..21037761 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:109900873..109901073 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:108373267..108373467 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000008 ID=UCD_Gh_M_000008; Name=UCD_Gh_M_000008; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CTAACGTAGACGTTAAGCGTGGGCCTCCAGGAATAATGGTCTCCGCTCGG
TCCTGGCAACAGACTGCTAATCGGGTATGCCGGTCCCATCCTGGCTCGCC
[C/G]GTTCCTAAGAAAAATACAGCGCGCACTAAGCTAATTGTACCAGAC
AAGTTCGGAGCTGATACTCCTTTTTCGTCTCCAAACGGTGTATTGAATAG
CAGAG