UCcot10213_61, UCcot10213_61 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cot10213_61
AliasUCcot10213_61
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceGATTTGCTATCTGTAAGTGATCAAATCTTA
3' Flanking SequenceTTCCTTATAGCAAAATGGTGTCTAAAGAAC
SpeciesGossypium spp.
Source Typeconserved orthologous set
Primer 1cot10213_F: CTCGATTGTGCAAGGAGTGA
Primer 2cot10213_R: TATAAGGGCAGCATGGCTCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018218.1chromosomeCM018218.1:43553395..43553455 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018205.1chromosomeCM018205.1:68082963..68083023 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_04chromosomeD5_04:10376579..10376639 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_2_4chromosomeKI_2_4:5937490..5937550 -Gossypioides kirkii genome ISU_v3
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:13779688..13779748 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
CM016617.1chromosomeCM016617.1:109817436..109817496 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr12chromosomeDt_chr12:9273893..9273953 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D04chromosomeD04:40337150..40337210 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A04chromosomeA04:50985544..50985604 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D04chromosomeGhir_D04:45290516..45290576 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A04chromosomeGhir_A04:71771456..71771516 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D04chromosomeD04:46289529..46289589 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A04chromosomeA04:74808582..74808642 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D04chromosomeD04:45180256..45180316 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A04chromosomeA04:71898248..71898308 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D04chromosomeD04:43170689..43170749 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A04chromosomeA04:67515391..67515451 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D04chromosomeGbar_D04:41663991..41664051 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A04chromosomeGbar_A04:68519100..68519160 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D04chromosomeD04:46767520..46767580 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A04chromosomeA04:69069024..69069084 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017626.1chromosomeCM017626.1:43873793..43873853 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017613.1chromosomeCM017613.1:70493169..70493229 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017652.1chromosomeCM017652.1:46694320..46694380 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017639.1chromosomeCM017639.1:78527539..78527599 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017704.1chromosomeCM017704.1:43825719..43825779 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017691.1chromosomeCM017691.1:68794506..68794566 +Gossypium darwinii (AD5) genome HGS_v1.1
D04chromosomeD04:46958419..46958479 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A04chromosomeA04:75500334..75500394 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr04chromosomeChr04:95262658..95262718 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr04chromosomeChr04:96688410..96688470 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr04chromosomeChr04:10326862..10326922 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_02chromosomeB_02:13533521..13533582 -Gossypium anomalum (B1) genome NSF_v1
Chr12chromosomeChr12:43470581..43470641 +Gossypium thurberi (D1-5) genome CRI_v1
chr12chromosomechr12:20948789..20948849 +Gossypium armourianum (D2-1) genome ISU_v1
Chr12chromosomeChr12:43203563..43203623 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr12chromosomeChr12:19610336..19610396 +Gossypium aridum (D4) genome ISU_v1
Chr12chromosomeChr12:15197234..15197293 +Gossypium gossypioides (D6) genome ISU_v1
Chr12chromosomeChr12:18570546..18570606 +Gossypium lobatum (D7) genome ISU_v1
F04chromosomeF04:79143174..79143234 +Gossypium longicalyx (F1) genome NSF_v1
Chr04chromosomeChr04:144703680..144703740 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr12chromosomeUCD_cot10213_61:1..61 .
Chr12:25119517..25119577 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch04_At.04N/A52.3UCcot10213_61View
Sequence
>UCD_cot10213_61 ID=UCD_cot10213_61; Name=UCD_cot10213_61; organism=Gossypium spp.; type=genetic_marker; length=65bp
GATTTGCTATCTGTAAGTGATCAAATCTTA[A/T]TTCCTTATAGCAAAA
TGGTGTCTAAAGAAC