UCcg11011_77, UCcg11011_77 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg11011_77
AliasUCcg11011_77
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceTGGGACATTGTTAATAAAATGAAATATGAT
3' Flanking SequenceACATGTGTAAATTGAATATTGTAATAGGCC
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg11011_F: AGCAACTGTGTGAATTGGGA
Primer 2cg11011_R: GTTGTGGAGCATGGAGGC
Primer 3cg11011_F: AGCAACTGTGTGAATTGGGA
Primer 4cg11011_R: GTTGTGGAGCATGGAGGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A107.99UCcg11011_77View
2TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A92.1UCcg11011_77View
3TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A92.12UCcg11011_77View
Sequence
>UCD_cg11011_77 ID=UCD_cg11011_77; Name=UCD_cg11011_77; organism=Gossypium spp.; type=genetic_marker; length=65bp
TGGGACATTGTTAATAAAATGAAATATGAT[A/T]ACATGTGTAAATTGA
ATATTGTAATAGGCC