UCcg10798_80, UCcg10798_80 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10798_80
AliasUCcg10798_80
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceGGCCAGTCTCTTCCTGAAAGCAAACGCTGG
3' Flanking SequenceGGGTTGACCAGCTTTTCCAATACCAAGGCT
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10798_F: CTCTTCCTGAAAGCAAACGC
Primer 2cg10798_R: GCGTGTTGGGAACAAAGAGT
Primer 3cg10798_F: CTCTTCCTGAAAGCAAACGC
Primer 4cg10798_R: GCGTGTTGGGAACAAAGAGT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A52.58UCcg10798_80View
2TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A53.4UCcg10798_80View
3TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A53.42UCcg10798_80View
Sequence
>UCD_cg10798_80 ID=UCD_cg10798_80; Name=UCD_cg10798_80; organism=Gossypium spp.; type=genetic_marker; length=65bp
GGCCAGTCTCTTCCTGAAAGCAAACGCTGG[A/T]GGGTTGACCAGCTTT
TCCAATACCAAGGCT