UCcg10674_411, UCcg10674_411 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10674_411
AliasUCcg10674_411
dbSNP IDN/A
TypeSNP
SNP AllelesT/G
5' Flanking SequenceGAGCCACTGTTGAAACTCCATCTGAGATAC
3' Flanking SequenceTGTAATAACTCCAAAAATGATAATTCTTTC
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10674_F: AGCAAACGCTAATGCGACTT
Primer 2cg10674_R: GTGGAAGAGCAGCAGAAACC
Primer 3cg10674_F: AGCAAACGCTAATGCGACTT
Primer 4cg10674_R: GTGGAAGAGCAGCAGAAACC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018212.1chromosomeCM018212.1:103618296..103618356 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:13296291..13296351 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr1chromosomeAt_chr1:6217071..6217131 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold3045_A11supercontigscaffold3045_A11:4041..4101 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A11chromosomeGhir_A11:112664503..112664563 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A11chromosomeA11:111169619..111169679 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A11chromosomeA11:108729605..108729665 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A11chromosomeA11:105508524..105508584 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A11chromosomeGbar_A11:102049059..102049119 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A11chromosomeA11:105208190..105208250 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017620.1chromosomeCM017620.1:109036011..109036071 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017646.1chromosomeCM017646.1:115610873..115610933 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017698.1chromosomeCM017698.1:104126482..104126542 +Gossypium darwinii (AD5) genome HGS_v1.1
A11chromosomeA11:113415980..113416040 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr11chromosomeChr11:117313676..117313736 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr11chromosomeChr11:115757186..115757246 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A129.92UCcg10674_411View
2TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A133.1UCcg10674_411View
3TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A133.15UCcg10674_411View
Sequence
>UCD_cg10674_411 ID=UCD_cg10674_411; Name=UCD_cg10674_411; organism=Gossypium spp.; type=genetic_marker; length=65bp
GAGCCACTGTTGAAACTCCATCTGAGATAC[G/T]TGTAATAACTCCAAA
AATGATAATTCTTTC