UCcg10487_205, UCcg10487_205 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10487_205
AliasUCcg10487_205
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
5' Flanking SequenceTAGATTTTATGTGAGAGGAATCTTTGCATT
3' Flanking SequenceTCTTTGTTGTCTCTTTAATTTAGTATTTGC
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10487_F: GCGTAGGAAGTACGGAGCTG
Primer 2cg10487_R: CATCCCACAACATTCACTGC
Primer 3cg10487_F: GCGTAGGAAGTACGGAGCTG
Primer 4cg10487_R: CATCCCACAACATTCACTGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:2774279..2774339 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:2930090..2930150 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr7chromosomeDt_chr7:36602904..36602964 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:2778390..2778450 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:2745843..2745903 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:2876485..2876545 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:2650326..2650386 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:2748417..2748477 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:2843105..2843165 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:2762732..2762792 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:2925646..2925706 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:2874945..2875005 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:2583646..2583706 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:3008024..3008084 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:2865531..2865591 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:2762350..2762410 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:92284940..92285000 +Gossypium anomalum (B1) genome NSF_v1n/a
F13chromosomeF13:2382217..2382277 -Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch13_At.13N/A26.03UCcg10487_205View
2TM-1 x 3-79, RIL (2014)AD_ch13_At.13N/A25.8UCcg10487_205View
3TM-1 x 3-79, RIL (2012.v3)AD_ch13_At.13N/A25.75UCcg10487_205View
Sequence
>UCD_cg10487_205 ID=UCD_cg10487_205; Name=UCD_cg10487_205; organism=Gossypium spp.; type=genetic_marker; length=65bp
TAGATTTTATGTGAGAGGAATCTTTGCATT[C/G]TCTTTGTTGTCTCTT
TAATTTAGTATTTGC