UCcg10310_614, UCcg10310_614 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10310_614
AliasUCcg10310_614
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceCTTGCATGTTATTGACAGTGGAGCTAACAC
3' Flanking SequenceTTTCCATGTGATGAAATGGATTCGTTTCTG
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10310_F: TTGGTGAAATCATTGGCAGA
Primer 2cg10310_R: AACAAACAACCGGGACAGAG
Primer 3cg10310_F: TTGGTGAAATCATTGGCAGA
Primer 4cg10310_R: AACAAACAACCGGGACAGAG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018213.1chromosomeCM018213.1:68956204..68956264 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:32509202..32509262 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr8chromosomeAt_chr8:59990605..59990665 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A12chromosomeA12:58264091..58264151 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A12chromosomeGhir_A12:76491272..76491332 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A12chromosomeA12:77759487..77759547 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A12chromosomeA12:74755297..74755357 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A12chromosomeA12:71666767..71666827 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A12chromosomeGbar_A12:71293518..71293578 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A12chromosomeA12:71073263..71073323 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017621.1chromosomeCM017621.1:72458377..72458437 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017647.1chromosomeCM017647.1:75262000..75262060 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017699.1chromosomeCM017699.1:71287356..71287416 +Gossypium darwinii (AD5) genome HGS_v1.1
A12chromosomeA12:77725067..77725127 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr12chromosomeChr12:16099725..16099785 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr12chromosomeChr12:84523602..84523662 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A48.28UCcg10310_614View
2TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A48.3UCcg10310_614View
3TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A48.28UCcg10310_614View
Sequence
>UCD_cg10310_614 ID=UCD_cg10310_614; Name=UCD_cg10310_614; organism=Gossypium spp.; type=genetic_marker; length=65bp
CTTGCATGTTATTGACAGTGGAGCTAACAC[A/T]TTTCCATGTGATGAA
ATGGATTCGTTTCTG