UCcg10021_481, UCcg10021_481 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10021_481
AliasUCcg10021_481
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGCCATCGAGAATGACGCTTTACAGATTTGG
3' Flanking SequenceAACACTTCAAGCAGTTCTTTGTGGTATGAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 2cg10021_R: ATGGTCTTCAATGCCTTCCA
Primer 3cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 4cg10021_R: ATGGTCTTCAATGCCTTCCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:32693271..32693331 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:30114375..30114435 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:25308910..25308970 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:67569180..67569240 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:30917412..30917472 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:68949765..68949825 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:89574027..89574087 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:38325089..38325149 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:33270855..33270915 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:43223342..43223402 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:33144516..33144576 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:55163423..55163483 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:32301053..32301113 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:57314239..57314299 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:33099422..33099482 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:55319453..55319513 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:33315229..33315289 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:50986461..50986521 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:32573585..32573645 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:33070318..33070378 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:36686414..36686474 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:53284240..53284300 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:33545717..33545777 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:57798880..57798940 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:33265608..33265668 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:33529924..33529984 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:58158824..58158884 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:18577803..18577863 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:58765666..58765726 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:32546786..32546846 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:49971360..49971420 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:32945464..32945524 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:28230430..28230490 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:22786778..22786838 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:33530489..33530549 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:24771192..24771252 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:19172715..19172775 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:24691789..24691849 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:57468015..57468075 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:48268342..48268402 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:80737742..80737801 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeUCD_cg10021_481:1..61 .
Chr11:32364563..32364623 +		n/a
Sequence
>UCD_cg10021_481 ID=UCD_cg10021_481; Name=UCD_cg10021_481; organism=Gossypium spp.; type=genetic_marker; length=65bp
GCCATCGAGAATGACGCTTTACAGATTTGG[A/G]AACACTTCAAGCAGT
TCTTTGTGGTATGAA