UCcg10021_481, UCcg10021_481 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10021_481
AliasUCcg10021_481
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGCCATCGAGAATGACGCTTTACAGATTTGG
3' Flanking SequenceAACACTTCAAGCAGTTCTTTGTGGTATGAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 2cg10021_R: ATGGTCTTCAATGCCTTCCA
Primer 3cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 4cg10021_R: ATGGTCTTCAATGCCTTCCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018224.1chromosomeCM018224.1:32693271..32693331 +
D5_10chromosomeD5_10:30114375..30114435 -
KI_10chromosomeKI_10:25308910..25308970 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:67569180..67569240 -
D10_10chromosomeD10_10:30917412..30917472 -
CM016623.1chromosomeCM016623.1:68949765..68949825 -
At_chr11chromosomeAt_chr11:89574027..89574087 +
Dt_chr11chromosomeDt_chr11:38325089..38325149 -
D10chromosomeD10:33270855..33270915 +
A10chromosomeA10:43223342..43223402 -
Ghir_D10chromosomeGhir_D10:33144516..33144576 +
Ghir_A10chromosomeGhir_A10:55163423..55163483 -
D10chromosomeD10:32301053..32301113 +
A10chromosomeA10:57314239..57314299 -
D10chromosomeD10:33099422..33099482 +
A10chromosomeA10:55319453..55319513 -
D10chromosomeD10:33315229..33315289 +
A10chromosomeA10:50986461..50986521 -
Gbar_D10chromosomeGbar_D10:32573585..32573645 +
D10chromosomeD10:33070318..33070378 +
CM017632.1chromosomeCM017632.1:36686414..36686474 -
CM017619.1chromosomeCM017619.1:53284240..53284300 -
CM017658.1chromosomeCM017658.1:33545717..33545777 +
CM017645.1chromosomeCM017645.1:57798880..57798940 -
CM017710.1chromosomeCM017710.1:33265608..33265668 +
D10chromosomeD10:33529924..33529984 +
A10chromosomeA10:58158824..58158884 -
Chr10chromosomeChr10:18577803..18577863 -
Chr10chromosomeChr10:58765666..58765726 +
Chr10chromosomeChr10:32546786..32546846 +
B_10chromosomeB_10:49971360..49971420 -
Chr11chromosomeChr11:32945464..32945524 -
chr11chromosomechr11:28230430..28230490 +
Chr_11chromosomeChr_11:22786778..22786838 +
Chr11chromosomeChr11:33530489..33530549 +
Chr11chromosomeChr11:24771192..24771252 +
Chr11chromosomeChr11:19172715..19172775 +
Chr11chromosomeChr11:24691789..24691849 +
E10chromosomeE10:57468015..57468075 -
F10chromosomeF10:48268342..48268402 +
Chr10chromosomeChr10:80737742..80737801 -
Chr11chromosomeUCD_cg10021_481:1..61 .
Chr11:32364563..32364623 +
Sequence
>UCD_cg10021_481 ID=UCD_cg10021_481; Name=UCD_cg10021_481; organism=Gossypium spp.; type=genetic_marker; length=65bp
GCCATCGAGAATGACGCTTTACAGATTTGG[A/G]AACACTTCAAGCAGT
TCTTTGTGGTATGAA