UCcg10021_66, UCcg10021_66 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10021_66
AliasUCcg10021_66
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTGGGGGGTGTCGCAATCCTTCTCTCCAACC
3' Flanking SequenceCTCATCCGATCGCCACCGCTCCAAATACCA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 2cg10021_R: ATGGTCTTCAATGCCTTCCA
Primer 3cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 4cg10021_R: ATGGTCTTCAATGCCTTCCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:32692856..32692916 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:30114790..30114850 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:67569595..67569655 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016623.1chromosomeCM016623.1:68950180..68950240 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:89573612..89573672 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:38325504..38325564 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:33270440..33270500 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:43223757..43223817 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:33144101..33144161 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:55163838..55163898 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:32300638..32300698 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:57314654..57314714 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:33099007..33099067 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:55319868..55319928 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:33314814..33314874 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:50986876..50986936 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:32573170..32573230 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:33069903..33069963 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:53284655..53284715 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:33545302..33545362 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:57799295..57799355 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:33265193..33265253 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:33529509..33529569 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:58159239..58159299 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:18578218..18578278 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:58765251..58765311 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:32546371..32546431 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:49971774..49971834 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:32945879..32945939 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:28230015..28230075 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr11chromosomeChr11:33530074..33530134 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:24770777..24770837 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:19172300..19172360 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:24691374..24691434 +Gossypium lobatum (D7) genome ISU_v1n/a
F10chromosomeF10:48267927..48267987 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:80738156..80738216 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeUCD_cg10021_66:1..61 .
Chr11:32364148..32364208 +		n/a
Sequence
>UCD_cg10021_66 ID=UCD_cg10021_66; Name=UCD_cg10021_66; organism=Gossypium spp.; type=genetic_marker; length=65bp
TGGGGGGTGTCGCAATCCTTCTCTCCAACC[A/G]CTCATCCGATCGCCA
CCGCTCCAAATACCA