UCcg10021_343, UCcg10021_343 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10021_343
AliasUCcg10021_343
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGAAAGTGTTGAAGATGAAGATCAAACCCTA
3' Flanking SequenceATCCCAGATTTCAAGTTGGCATTCGAACAT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 2cg10021_R: ATGGTCTTCAATGCCTTCCA
Primer 3cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 4cg10021_R: ATGGTCTTCAATGCCTTCCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:32693133..32693193 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:30114513..30114573 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:25309048..25309108 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:67569318..67569378 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:30917550..30917610 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:68949903..68949963 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:89573889..89573949 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:38325227..38325287 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:33270717..33270777 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:43223480..43223540 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:33144378..33144438 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:55163561..55163621 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:32300915..32300975 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:57314377..57314437 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:33099284..33099344 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:55319591..55319651 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:33315091..33315151 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:50986599..50986659 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:32573447..32573507 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:33070180..33070240 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:36686552..36686612 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:53284378..53284438 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:33545579..33545639 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:57799018..57799078 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:33265470..33265530 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:33529786..33529846 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:58158962..58159022 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:18577941..18578001 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:58765528..58765588 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:32546648..32546708 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:49971498..49971558 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:32945602..32945662 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:28230292..28230352 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:22786640..22786700 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:33530351..33530411 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:24771054..24771114 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:19172577..19172637 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:24691651..24691711 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:57468153..57468213 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:48268204..48268264 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:80737879..80737939 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeUCD_cg10021_343:1..61 .
Chr11:32364425..32364485 +		n/a
Sequence
>UCD_cg10021_343 ID=UCD_cg10021_343; Name=UCD_cg10021_343; organism=Gossypium spp.; type=genetic_marker; length=65bp
GAAAGTGTTGAAGATGAAGATCAAACCCTA[C/T]ATCCCAGATTTCAAG
TTGGCATTCGAACAT