UCcg10021_343, UCcg10021_343 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10021_343
AliasUCcg10021_343
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGAAAGTGTTGAAGATGAAGATCAAACCCTA
3' Flanking SequenceATCCCAGATTTCAAGTTGGCATTCGAACAT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 2cg10021_R: ATGGTCTTCAATGCCTTCCA
Primer 3cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 4cg10021_R: ATGGTCTTCAATGCCTTCCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018224.1chromosomeCM018224.1:32693133..32693193 +
D5_10chromosomeD5_10:30114513..30114573 -
KI_10chromosomeKI_10:25309048..25309108 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:67569318..67569378 -
D10_10chromosomeD10_10:30917550..30917610 -
CM016623.1chromosomeCM016623.1:68949903..68949963 -
At_chr11chromosomeAt_chr11:89573889..89573949 +
Dt_chr11chromosomeDt_chr11:38325227..38325287 -
D10chromosomeD10:33270717..33270777 +
A10chromosomeA10:43223480..43223540 -
Ghir_D10chromosomeGhir_D10:33144378..33144438 +
Ghir_A10chromosomeGhir_A10:55163561..55163621 -
D10chromosomeD10:32300915..32300975 +
A10chromosomeA10:57314377..57314437 -
D10chromosomeD10:33099284..33099344 +
A10chromosomeA10:55319591..55319651 -
D10chromosomeD10:33315091..33315151 +
A10chromosomeA10:50986599..50986659 -
Gbar_D10chromosomeGbar_D10:32573447..32573507 +
D10chromosomeD10:33070180..33070240 +
CM017632.1chromosomeCM017632.1:36686552..36686612 -
CM017619.1chromosomeCM017619.1:53284378..53284438 -
CM017658.1chromosomeCM017658.1:33545579..33545639 +
CM017645.1chromosomeCM017645.1:57799018..57799078 -
CM017710.1chromosomeCM017710.1:33265470..33265530 +
D10chromosomeD10:33529786..33529846 +
A10chromosomeA10:58158962..58159022 -
Chr10chromosomeChr10:18577941..18578001 -
Chr10chromosomeChr10:58765528..58765588 +
Chr10chromosomeChr10:32546648..32546708 +
B_10chromosomeB_10:49971498..49971558 -
Chr11chromosomeChr11:32945602..32945662 -
chr11chromosomechr11:28230292..28230352 +
Chr_11chromosomeChr_11:22786640..22786700 +
Chr11chromosomeChr11:33530351..33530411 +
Chr11chromosomeChr11:24771054..24771114 +
Chr11chromosomeChr11:19172577..19172637 +
Chr11chromosomeChr11:24691651..24691711 +
E10chromosomeE10:57468153..57468213 -
F10chromosomeF10:48268204..48268264 +
Chr10chromosomeChr10:80737879..80737939 -
Chr11chromosomeUCD_cg10021_343:1..61 .
Chr11:32364425..32364485 +
Sequence
>UCD_cg10021_343 ID=UCD_cg10021_343; Name=UCD_cg10021_343; organism=Gossypium spp.; type=genetic_marker; length=65bp
GAAAGTGTTGAAGATGAAGATCAAACCCTA[C/T]ATCCCAGATTTCAAG
TTGGCATTCGAACAT