UCcg10021_304, UCcg10021_304 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10021_304
AliasUCcg10021_304
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceGTCGGAGCAACTCCTGTTTTTCGTCACGTT
3' Flanking SequenceGTGGCAAGGAAAGTGTTGAAGATGAAGATC
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 2cg10021_R: ATGGTCTTCAATGCCTTCCA
Primer 3cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 4cg10021_R: ATGGTCTTCAATGCCTTCCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:32693094..32693154 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:30114552..30114612 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:25309087..25309147 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:67569357..67569417 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:30917589..30917649 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:68949943..68950002 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:89573850..89573910 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:38325266..38325326 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:33270678..33270738 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:43223519..43223579 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:33144339..33144399 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:55163600..55163660 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:32300876..32300936 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:57314416..57314476 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:33099245..33099305 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:55319630..55319690 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:33315052..33315112 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:50986638..50986698 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:32573408..32573468 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:33070141..33070201 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:36686591..36686651 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:53284417..53284477 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:33545540..33545600 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:57799057..57799117 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:33265431..33265491 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:33529747..33529807 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:58159001..58159061 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:18577980..18578040 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:58765489..58765549 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:32546609..32546669 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:49971537..49971597 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:32945641..32945701 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:28230253..28230313 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr11chromosomeChr11:24771015..24771075 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:19172538..19172598 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:24691612..24691672 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:57468192..57468252 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:48268165..48268225 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:80737919..80737978 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeUCD_cg10021_304:1..61 .
Chr11:32364386..32364446 +		n/a
Sequence
>UCD_cg10021_304 ID=UCD_cg10021_304; Name=UCD_cg10021_304; organism=Gossypium spp.; type=genetic_marker; length=65bp
GTCGGAGCAACTCCTGTTTTTCGTCACGTT[A/G]GTGGCAAGGAAAGTG
TTGAAGATGAAGATC