UCcg10011_386, UCcg10011_386 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10011_386
AliasUCcg10011_386
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceGACGGCGAAAAGATGGGCGGAGACACCTCC
3' Flanking SequenceATCACCCAGAATTGTTCATTGCGCCACCAG
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10011_F: GAAATTGGCTAAGGATGGCA
Primer 2cg10011_R: CCCAAACAAGTGAGAAAATCG
Primer 3cg10011_F: GAAATTGGCTAAGGATGGCA
Primer 4cg10011_R: CCCAAACAAGTGAGAAAATCG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:5648718..5648778 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:5509111..5509171 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:4409915..4409975 +Gossypioides kirkii genome ISU_v3n/a
D10_08chromosomeD10_08:56892147..56892207 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:135635646..135635706 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr4chromosomeDt_chr4:30992575..30992635 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:5699528..5699588 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:5743850..5743910 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:5491056..5491116 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:5190821..5190881 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:5808819..5808879 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:5776313..5776373 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:5889705..5889765 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:5898209..5898269 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:6144964..6145024 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:5741081..5741141 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:5918798..5918858 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:5511324..5511384 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:7372630..7372690 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:5534492..5534552 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:4974439..4974499 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:4794124..4794184 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:5631612..5631672 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:4994582..4994642 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04_3470591chromosomeChr04_3470591:10418..10478 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:4784072..4784132 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:8768015..8768075 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:5660234..5660294 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:190262234..190262294 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr04chromosomeUCD_cg10011_386:1..61 .
Chr04:5514653..5514713 +		n/a
Sequence
>UCD_cg10011_386 ID=UCD_cg10011_386; Name=UCD_cg10011_386; organism=Gossypium spp.; type=genetic_marker; length=65bp
GACGGCGAAAAGATGGGCGGAGACACCTCC[A/G]ATCACCCAGAATTGT
TCATTGCGCCACCAG