UCcg10010_529, UCcg10010_529 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10010_529
AliasUCcg10010_529
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
5' Flanking SequenceTTCTCCTTTTCCATGAATATTTGGTAACTT
3' Flanking SequenceCTTTTTTACTCTCTTTGATTCTCCTTATAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 2cg10010_R: AGAGGCATCGCATAATTGCT
Primer 3cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 4cg10010_R: AGAGGCATCGCATAATTGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:92399736..92399796 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:96018752..96018812 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2269.1supercontigscaffold2269.1:119595..119655 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:76867383..76867443 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:96326916..96326976 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:95247684..95247744 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:95322776..95322836 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:91835947..91836007 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:91341987..91342047 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:93658657..93658717 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:95361116..95361176 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:98247776..98247836 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:93699216..93699276 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:97512401..97512461 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:99254080..99254140 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:100591898..100591958 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_07chromosomeB_07:81538876..81538936 -Gossypium anomalum (B1) genome NSF_v1n/a
F07chromosomeF07:81048279..81048339 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:156098078..156098138 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>UCD_cg10010_529 ID=UCD_cg10010_529; Name=UCD_cg10010_529; organism=Gossypium spp.; type=genetic_marker; length=65bp
TTCTCCTTTTCCATGAATATTTGGTAACTT[A/C]CTTTTTTACTCTCTT
TGATTCTCCTTATAA