UCcg10010_475, UCcg10010_475 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10010_475
AliasUCcg10010_475
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceCCACCACAAGGATGATTAGGGGTGGCAAAT
3' Flanking SequenceTGTTTAATTTTAGGGGACTAACATTCTCCT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 2cg10010_R: AGAGGCATCGCATAATTGCT
Primer 3cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 4cg10010_R: AGAGGCATCGCATAATTGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:92399682..92399742 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:96018698..96018758 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2269.1supercontigscaffold2269.1:119649..119709 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:76867329..76867389 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:96326862..96326922 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:95247630..95247690 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:95322722..95322782 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:91835893..91835953 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:91341933..91341993 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:93658603..93658663 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:95361062..95361122 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:98247722..98247782 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:93699162..93699222 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:97512347..97512407 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:99254026..99254086 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:100591844..100591904 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>UCD_cg10010_475 ID=UCD_cg10010_475; Name=UCD_cg10010_475; organism=Gossypium spp.; type=genetic_marker; length=65bp
CCACCACAAGGATGATTAGGGGTGGCAAAT[C/T]TGTTTAATTTTAGGG
GACTAACATTCTCCT