UCcg10010_405, UCcg10010_405 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10010_405
AliasUCcg10010_405
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAAGTTAAAATTCCATTTGTTTCTTTTTTAC
3' Flanking SequenceGTATAATGTTTGCTTATGATACTCATATAT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 2cg10010_R: AGAGGCATCGCATAATTGCT
Primer 3cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 4cg10010_R: AGAGGCATCGCATAATTGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:92399612..92399672 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold2269.1supercontigscaffold2269.1:119719..119779 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:76867259..76867319 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:96326792..96326852 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:95247560..95247620 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:95322652..95322712 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:91835823..91835883 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:91341863..91341923 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:93658533..93658593 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:95360992..95361052 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:98247652..98247712 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:93699092..93699152 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:97512277..97512337 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:54458441..54458501 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:39094385..39094444 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:32061715..32061775 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>UCD_cg10010_405 ID=UCD_cg10010_405; Name=UCD_cg10010_405; organism=Gossypium spp.; type=genetic_marker; length=65bp
AAGTTAAAATTCCATTTGTTTCTTTTTTAC[A/G]GTATAATGTTTGCTT
ATGATACTCATATAT