UCcg10010_256, UCcg10010_256 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10010_256
AliasUCcg10010_256
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCGGAAGATTCAAAGCATAATCCATCCCAAA
3' Flanking SequenceGTCTAAGCATGAAAGAGTGGCTGAAAAGGC
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 2cg10010_R: AGAGGCATCGCATAATTGCT
Primer 3cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 4cg10010_R: AGAGGCATCGCATAATTGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:54597198..54597259 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:92399463..92399523 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:50016511..50016572 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:96018483..96018543 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:1449340..1449400 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold2269.1supercontigscaffold2269.1:119867..119927 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold104.1supercontigscaffold104.1:1370073..1370134 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:53736418..53736479 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:76867111..76867171 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:57697496..57697557 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:96326644..96326704 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:56942165..56942226 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:95247412..95247472 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:57320628..57320689 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:95322504..95322564 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:53652428..53652489 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:91835675..91835735 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:54987210..54987271 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:91341714..91341774 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:55569109..55569170 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:93658384..93658444 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:55528499..55528560 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:95360844..95360904 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:56523429..56523490 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:98247504..98247564 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:55603362..55603423 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:93698944..93699004 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:57917250..57917311 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:97512129..97512189 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:99253808..99253868 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:100591629..100591689 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:1455508..1455569 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:81539147..81539207 -Gossypium anomalum (B1) genome NSF_v1n/a
chr01chromosomechr01:44180762..44180822 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:39094238..39094298 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:41218702..41218763 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:32061568..32061628 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:39822678..39822739 +Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:81047999..81048059 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:156097813..156097873 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr01chromosomeUCD_cg10010_256:1..61 .
Chr01:54072209..54072270 +		n/a
Sequence
>UCD_cg10010_256 ID=UCD_cg10010_256; Name=UCD_cg10010_256; organism=Gossypium spp.; type=genetic_marker; length=65bp
CGGAAGATTCAAAGCATAATCCATCCCAAA[C/T]GTCTAAGCATGAAAG
AGTGGCTGAAAAGGC