UCcg10005_307, UCcg10005_307 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10005_307
AliasUCcg10005_307
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceACGACAAAGATTATGTTGCATAAACCAAAC
3' Flanking SequenceGCAAAGAGTGGTCGTCTTGATCTTGTGTTT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10005_F: CCTTCTCCACCAAGCTTCAG
Primer 2cg10005_R: GCCATTGATGGCATTGCT
Primer 3cg10005_F: CCTTCTCCACCAAGCTTCAG
Primer 4cg10005_R: GCCATTGATGGCATTGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:64616642..64616702 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:27410799..27410859 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:34916813..34916873 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:30508518..30508578 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:82549178..82549238 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:36280554..36280614 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:60702150..60702210 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:34272605..34272665 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:26531787..26531847 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:56899674..56899734 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:27804263..27804323 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:68429973..68430033 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:27692325..27692385 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:70010512..70010572 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:26913896..26913956 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:68191290..68191350 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:27855538..27855598 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:63843129..63843189 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:27821953..27822013 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:64982929..64982989 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:27339642..27339702 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:66526976..66527036 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:27603281..27603341 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:65620096..65620156 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:27347284..27347344 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:71077691..71077751 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:27881087..27881147 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:67472342..67472402 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:27972203..27972263 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:71254286..71254346 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:28023241..28023301 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:33793652..33793712 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:45473118..45473178 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:27274164..27274224 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:61125842..61125902 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:38311854..38311914 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:23916493..23916553 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:19510582..19510642 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:27990571..27990631 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:21374396..21374456 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:16600867..16600927 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:21343063..21343123 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:82896013..82896073 +Gossypium stocksii (E1) genome NSF_v1n/a
E10chromosomeE10:66638920..66638980 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:37545076..37545136 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:66174683..66174743 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeUCD_cg10005_307:1..61 .
Chr11:27153444..27153504 -		n/a
Sequence
>UCD_cg10005_307 ID=UCD_cg10005_307; Name=UCD_cg10005_307; organism=Gossypium spp.; type=genetic_marker; length=65bp
ACGACAAAGATTATGTTGCATAAACCAAAC[A/G]GCAAAGAGTGGTCGT
CTTGATCTTGTGTTT