TMB1629, TMB1629 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB1629
AliasTMH B87-O19
Genbank IDBV679619
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679619.1
Source Typegenomic
Repeat Motif(GAA)10
PCR ConditionAnnealing temperature: 55
Primer 1TMB1629_F: TTCCAAGGTTTGCCTTTGTT
Primer 2TMB1629_R: TCATGAAAGAGATAAAGGAGAAAAGA
Product Length240
PolymorphismP_ TMB1629
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679619
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:51361530..51361769 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:49337286..49337600 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM016621.1chromosomeCM016621.1:22119155..22119474 +Gossypium australe (G2) genome CRI_v1.1n/a
D10chromosomeD10:48918768..48919007 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:51440652..51440891 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:51610399..51610638 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:50147356..50147595 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:48445786..48446025 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4706supercontigscaffold4706:160104..160424 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:49068308..49068622 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:50332224..50332538 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:49153497..49153730 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:51168975..51169211 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:50380696..50380992 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:51494265..51494504 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:113458891..113459172 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:35747079..35747358 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:48228617..48228936 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:49505374..49505680 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:34494010..34494250 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:34450393..34450628 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:98310942..98311229 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr08chromosomeChr08:31023043..31023337 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomeChr09:6231096..6231375 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679619.1BV679619.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch20_Dt.10N/A48.34TMB1629View
2TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A48.6TMB1629View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A77.3TMB1629View
4TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A48.56TMB1629View
Sequence
>TMB1629 ID=TMB1629; Name=TMB1629; organism=Gossypium hirsutum; type=genetic_marker; length=240bp
TTCCAAGGTTTGCCTTTGTTATTACACAATTTACAGCTTTGCTATTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTATGCTCTCTAAAGTACTTACACT
ATCTTTCATGGTCACTTCTATTCTTATCTTCTATAATCTATTTTGAATTT
TTTTTCATCACAAGTATTTCTCTATATTTTCATTCATATTTTCTATTATA
AATTTTAAATTCTATCTTTTCTCCTTTATCTCTTTCATGA