TMB1271, TMB1271 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB1271
AliasTMH A82-N11
Genbank IDBV679928
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source Sequencereverse_complement_BV679928.1
Source Typegenomic
Repeat Motif(CA)15 + (CA)21; (CA)15+(CA)21
PCR ConditionAnnealing temperature: 55
Primer 1TMB1271_F: TCGATTAAAAATGAGCCTTGG
Primer 2TMB1271_R: GGATACAATCTAATTTCATCCCAAT
Product Length241
PolymorphismP_ TMB1271
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679928
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
reverse_complement_BV679928.1reverse_complement_BV679928.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch16_Dt.07N/A35TMHA82View
2Deltapine-61 x Texas-701, F2 (2007)AD_ch16_Dt.07N/A28.5TMB1271-237View
3AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A113TMB1271View
4TM-1 x 3-79, RIL (2012)AD_ch16_Dt.07N/A66.7TMB1271View
5TM-1 x 3-79, RIL (2014)AD_ch16_Dt.07N/A55.8TMB1271View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch16_Dt.07N/A77.6TMB1271View
7TM-1 x 3-79, RIL (2012.v3)AD_ch16_Dt.07N/A55.84TMB1271View
Sequence
>TMB1271 ID=TMB1271; Name=TMB1271; organism=Gossypium hirsutum; type=genetic_marker; length=241bp
TCGATTAAAAATGAGCCTTGGGGGCCAAATTGATTGAATGTGTCAATAGA
ATTGTGTGTGTGTGTGAACAAAATTGAAAAATGAAAGATTAGATGCCATT
AATTGAAAAATGAAAATTTAGTATCATAGTGTTATATGTATGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGAAATTGGGATGAAATTAGATTGTATCC