TMB1025, TMB1025 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB1025
AliasTMH A44-K11
Genbank IDBV679470
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679470.1
Source Typegenomic
Repeat Motif(GAA)5
PCR ConditionAnnealing temperature: 55
Primer 1TMB1025_F: TTTGGCATTCTATACCGAAATATG
Primer 2TMB1025_R: ATGTGGGGCATAGAGGTCAG
Product Length205
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679470
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:69084530..69084734 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:79177844..79178051 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:23355128..23355332 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:41929641..41929845 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold451_A02supercontigscaffold451_A02:162031..162235 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:86402042..86402246 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:86649346..86649550 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:84367873..84368077 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:82989331..82989535 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1122supercontigscaffold1122:114679..114886 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:79689113..79689320 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:81389506..81389713 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:83106297..83106501 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:87834237..87834441 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:81049253..81049460 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:86275545..86275749 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:78441445..78441649 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679470.1BV679470.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A55.41TMB1025bView
2TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A56.3TMB1025bView
3TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A38.34TMB1025aView
4TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A78TMB1025aView
5TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A56.29TMB1025bView
6TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A78.03TMB1025aView
Sequence
>TMB1025 ID=TMB1025; Name=TMB1025; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
TTTGGCATTCTATACCGAAATATGATTTCTTCTTTTCTCTTCTTCTTCTT
CTTCTTTTTTAGAATTTGATAACTGTCGACTTTATGACATTAGCACCTAA
AGCAACTTCCACCCACTTAATGAAGTAATTGATGACCATAGAGATGAATC
GCTGCTTTCTAAAAACTTTTGATGAGACTGGCCCACTGACCTCTATGCCC
CACAT