TMB0561, TMB0561 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	TMB0561
Alias	TMJ19
Genbank ID	BV679896
Type	SSR
Species	Gossypium hirsutum
Germplasm	TM-1
Source Sequence	reverse_complement_BV679896.1
Source Type	genomic
Repeat Motif	(CA)30
PCR Condition	Annealing temperature: 55
Primer 1	TMB0561_F: ATTTGCTCAATGTGGTGTGC
Primer 2	TMB0561_R: CCATATCATCGATACCTCAG
Product Length	200
Contact	Yu, John Z. (Zhi-Hong)
Comment	Primer data obtained in 2005-10

Contact

Name

Details

Yu, John Z. (Zhi-Hong)

Description:	Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:	John
Last name:	Yu
Title:	Research Geneticist
Institution:	USDA-ARS
Address:	2765 F&B Road, College Station, Texas 77845
Country:	United States
Email:	zyu@qutun.tamu.edu
Phone:	1-979-260-9237
Fax:	1-979-260-9333
Keywords:	Cotton Molecular Genetics
Last update:	6-Sep-2007

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	BV679896

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A07	chromosome	A07:43439468..43439669 -
CM018208.1	chromosome	CM018208.1:41866842..41867007 -
Dt_chr1	chromosome	Dt_chr1:2128759..2129706 +
scaffold1835_A07	supercontig	scaffold1835_A07:52307..52510 -
Ghir_D07	chromosome	Ghir_D07:29707598..29707747 -
Ghir_A07	chromosome	Ghir_A07:43900718..43900919 -
A07	chromosome	A07:42748103..42748306 -
A07	chromosome	A07:43929451..43929648 -
A07	chromosome	A07:42913947..42914142 -
Dt07	chromosome	Dt07:32255143..32255292 -
scaffold2138	supercontig	scaffold2138:11791..11956 +
scaffold5193	supercontig	scaffold5193:40702..40851 -
Gbar_D07	chromosome	Gbar_D07:29472563..29472712 -
Gbar_A07	chromosome	Gbar_A07:41959347..41959512 -
A07	chromosome	A07:42005490..42005655 -
CM017616.1	chromosome	CM017616.1:43148963..43149126 -
CM017642.1	chromosome	CM017642.1:43445607..43445768 -
CM017694.1	chromosome	CM017694.1:42442348..42442525 -
A07	chromosome	A07:44675971..44676172 -

Germplasm


Stock Name	Type
TM-1	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
reverse_complement_BV679896.1	reverse_complement_BV679896.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	CCRI-36 x Hai-7124, F2 (2007)	AD_ch07_At.07	N/A	102.3	TMJ19	View
2	PD6992 x SM3, F2:3 (2005)	AD_ch07_At.07	N/A	14.2	TMJ19	View
3	Deltapine-61 x Texas-701, F2 (2007)	AD_ch16_Dt.07	N/A	0	TMB0561-237	View
4	Deltapine-61 x Texas-701, F2 (2007)	AD_ch16_Dt.07	N/A	2.5	TMB0561-199	View
5	JLZM x ZJXSLS, F2 (2008)	A_JZ_A03	N/A	68.6	TMJ19-b	View
6	AD-genome wide Reference Map (2009)	AD_ch07_At.07	N/A	125	tmb0561	View
7	TM-1 x 3-79, RIL (2012)	AD_ch07_At.07	N/A	86.55	tmb0561	View
8	TM-1 x 3-79, RIL (2014)	AD_ch07_At.07	N/A	51.1	tmb0561	View
9	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch07_At.07	N/A	80	tmb0561	View
10	Vsg x (TM-1 x Hai-7124), DH (2005)	AD_ch16_Dt.07	N/A	112.3	TMJ19-200	View
11	Xinluzao-1 x Hai-7124, F2 (2008)	AD_chU	N/A	53.4	TMHJ19	View
12	TM-1 x 3-79, RIL (2012.v3)	AD_ch07_At.07	N/A	51.09	TMB0561	View

Sequence

>TMB0561 ID=TMB0561; Name=TMB0561; organism=Gossypium hirsutum; type=genetic_marker; length=200bp
ATTTGCTCAATGTGGTGTGCAGGGTGGTCGGACAGGTGTTTGGCTGGATG
GGTGGGTTTTTATTACTTGTTGCATTCATACGCATCTGATTAAATGCCTG
AATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTTTGACTATGCGAGTACTGAGGTATCGATGATATGG

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TMB0561, TMB0561 (genetic_marker) Gossypium hirsutum