STV0123, STV0123 (genetic_marker) Gossypium raimondii

Marker Overview


Name	STV0123
Alias	STV123 STV_Contig_4800a
Genbank ID	CO110388
Type	SSR
Species	Gossypium raimondii
Source Type	EST
Repeat Motif	AT
Primer 1	STV123_F: TATTCGATGGACTCCAGCCTT
Primer 2	STV123_R: TGTTGTATTGTTTGGTTCTACACACA
Restriction Enzyme	NotI; EcoRV
Polymorphism	P_ STV0123
Publication	[view all]
Contact	Scheffler, Jodi A.
Comment	Primer data obtained in 2006

Contact

Name

Details

Scheffler, Jodi A.

First name:	Jodi
Last name:	Scheffler
Title:	Research Geneticist
Institution:	USDA-ARS
Address:	141 Experiment Station Road, Stoneville, Mississippi 38776
Country:	United States
Email:	jodi.Scheffler@usda.gov
Phone:	+001 662 686-5219
Keywords:	Cotton Geneticist
Last update:	20-Feb-2007

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CO110388

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018211.1	chromosome	CM018211.1:539692..539776 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Chr10_CRI-A2_v1.0.a1	chromosome	Chr10_CRI-A2_v1.0.a1:128908988..128909076 -	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
scaffold26.1	supercontig	scaffold26.1:2844151..2844233 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
Ghir_A10	chromosome	Ghir_A10:135878..135960 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
At10	chromosome	At10:581815..581899 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
scaffold13234	supercontig	scaffold13234:133464..133548 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
scaffold14447	supercontig	scaffold14447:46351..46431 -	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_A10	chromosome	Gbar_A10:616438..616522 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A10	chromosome	A10:586866..586950 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017619.1	chromosome	CM017619.1:584812..584896 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017645.1	chromosome	CM017645.1:605762..605846 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017697.1	chromosome	CM017697.1:607490..607574 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
Chr10	chromosome	Chr10:614072..614162 +	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a
Chr10	chromosome	Chr10:601997..602085 +	Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1	n/a

Publications


Year	Publication
2006	Taliercio E, Allen R, Essenberg M, Klueva N, Nguyen H, Patil M, Payton P, Millena A, Phillips A, Pierce M. Analysis of ESTs from multiple Gossypium hirsutum tissues and identification of SSRs. Genome. 2006; 49(4):306-319

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	TM-1 x 3-79, RIL (2012)	AD_ch10_At.10	N/A	69.8	STV123	View
2	Yumian-1 x T586, RIL (2006)	AD_ch14_Dt.02	N/A	47.1	STV123	View
3	Yumian-1 x T586, RIL (2015)	AD_ch10_At.10	N/A	1.2	STV123	View
4	Yumian-1 x 7235, RIL (2015)	AD_ch10_At.10	N/A	23.8	STV123	View
5	TM-1 x 3-79, RIL (2014)	AD_ch10_At.10	N/A	72.5	STV123	View
6	Yumian-1 x T586, RIL (2009)	AD_ch10_At.10	N/A	6.5	STV0123/95t	View
7	TM-1 x 3-79, RIL (2012.v3)	AD_ch10_At.10	N/A	72.48	STV123	View

Sequence

>STV0123 ID=STV0123; Name=STV0123; organism=Gossypium raimondii; type=genetic_marker; length=90bp
TATTCGATGGACTCCAGCCTTCACACATGGGCAAGGGAGGTCACCCCTCA
TATATATATATATGTGTGTGTAGAACCAAACAATACAACA

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STV0123, STV0123 (genetic_marker) Gossypium raimondii