NBRI_gA007, NBRI_gA007 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gA007
Genbank IDHQ524323
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(AC)15
PCR ConditionAnnealing temperature: 49
Primer 1NBRI_gA007_F: ACGACCTGCATTCAATGTATG
Primer 2NBRI_gA007_R: TGCCAAATGATATTTAAGCTCC
Product Length149
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524323
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:79090503..79090641 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:74385649..74385787 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_09chromosomeKI_09:36695038..36695190 -Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:81163838..81163976 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold251.1supercontigscaffold251.1:729966..730104 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:72260650..72260788 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:79304985..79305123 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:80552579..80552717 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:80753396..80753534 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:77322894..77323032 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:50855089..50855227 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt09chromosomeDt09:50858596..50858734 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt09chromosomeDt09:50862366..50862516 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At09chromosomeAt09:75730108..75730246 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23519supercontigscaffold23519:109400..109538 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23519supercontigscaffold23519:112907..113045 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21075supercontigscaffold21075:47923..48061 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:75160749..75160887 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:76588400..76588538 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:76526658..76526800 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:79823991..79824129 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:76680271..76680411 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:82567844..82567982 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:81674720..81674868 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:84381700..84381838 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:129460170..129460320 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Vagadaccession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A89.9NBRI0004View
Sequence
>NBRI_gA007 ID=NBRI_gA007; Name=NBRI_gA007; organism=Gossypium herbaceum; type=genetic_marker; length=149bp
ACGACCTGCATTCAATGTATGCTCTCTCTATACACACACACACACACACA
CACACACACACATATATACGTGAATGCCTATTTATATATTTTAACCATTA
CTTAAGTGATTCCTATTGTTTAAACCAGGAGCTTAAATATCATTTGGCA