NBRI_e1406, NBRI_e1406 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_e1406
Genbank IDHQ526411
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source TypeEST
Repeat Motif(T)12
PCR ConditionAnnealing temperature: 57
Primer 1NBRI_e1406_F: TGTCGTGTCCCTCACACACT
Primer 2NBRI_e1406_R: CCGCAAGTGATGAGTTTGAA
Product Length147
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ526411
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D01chromosomeD01:17733272..17733410 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018215.1chromosomeCM018215.1:17240628..17240766 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
KI_01chromosomeKI_01:10311343..10311490 -Gossypioides kirkii genome ISU_v3
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:24319364..24319508 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_01chromosomeD10_01:43741588..43741728 +Gossypium turneri (D10) genome NSF_v1_a2
Dt_chr6chromosomeDt_chr6:514274..514412 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D01chromosomeD01:16516310..16516448 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01chromosomeGhir_D01:17819638..17819776 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01chromosomeD01:17398504..17398642 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:17347606..17347744 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01chromosomeD01:17715285..17715423 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt01chromosomeDt01:17116963..17117101 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold15558supercontigscaffold15558:45460..45602 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold224supercontigscaffold224:170925..171063 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D01chromosomeGbar_D01:17855460..17855598 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:17590522..17590660 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017623.1chromosomeCM017623.1:17606648..17606786 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017610.1chromosomeCM017610.1:23469869..23470012 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017649.1chromosomeCM017649.1:18446659..18446797 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017636.1chromosomeCM017636.1:22871231..22871374 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:17622997..17623135 -Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:18066803..18066941 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:23423640..23423783 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:24908055..24908199 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr_02chromosomeChr_02:13099365..13099505 -Gossypium harknessii (D2-2) genome ISU_v1
Chr02chromosomeChr02:17239809..17239947 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr02chromosomeChr02:15956727..15956865 -Gossypium aridum (D4) genome ISU_v1
Chr02chromosomeChr02:11358452..11358594 -Gossypium gossypioides (D6) genome ISU_v1
Chr02chromosomeChr02:14419533..14419672 -Gossypium lobatum (D7) genome ISU_v1
F01chromosomeF01:19760900..19761043 -Gossypium longicalyx (F1) genome NSF_v1
Germplasm
Stock NameType
Vagadaccession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A47.3NBRI1662View
Sequence
>NBRI_e1406 ID=NBRI_e1406; Name=NBRI_e1406; organism=Gossypium herbaceum; type=genetic_marker; length=147bp
TGTCGTGTCCCTCACACACTCGCTAGAGTTAAAAAGACTTAAGAGAGTGA
AGGATAGAAGAAGAAAGCAAAGGGAAAGTCAATTGAATTTTTTTTTTTTA
AAAATTAGGGAAAATACCACTTCCTGTTTCAAACTCATCACTTGCGG