NAU5227, NAU5227 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5227
Genbank IDDT569082
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
TM-1
Source SequenceDT569082.1
Source TypeEST
Repeat Motif(cagcac)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU5227_F: ACAACACAACCACAAACAGC
Primer 2NAU5227_R: AGTGGAGGCCATGAAGATT
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT569082
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:65818985..65819268 +
A10chromosomeA10:109408789..109409090 +
CM018224.1chromosomeCM018224.1:63151183..63151465 -
CM018211.1chromosomeCM018211.1:107434452..107434728 -
D5_10chromosomeD5_10:2054490..2054790 -
KI_10chromosomeKI_10:1621730..1622008 -
D10_10chromosomeD10_10:1918624..1918919 -
CM016623.1chromosomeCM016623.1:142585667..142585954 +
At_chr4chromosomeAt_chr4:88800928..88801229 -
D10chromosomeD10:61691821..61692104 +
A10chromosomeA10:98385777..98386078 +
Ghir_D10chromosomeGhir_D10:65684531..65684814 +
Ghir_A10chromosomeGhir_A10:112266836..112267137 +
D10chromosomeD10:64924276..64924559 +
A10chromosomeA10:112710704..112711005 +
D10chromosomeD10:63891718..63892000 +
A10chromosomeA10:112376124..112376425 +
D10chromosomeD10:62188003..62188286 +
A10chromosomeA10:106807817..106808118 +
At10chromosomeAt10:104561121..104561397 +
scaffold1389supercontigscaffold1389:123791..124067 +
scaffold2575supercontigscaffold2575:114535..114830 -
Gbar_D10chromosomeGbar_D10:63115629..63115911 +
Gbar_A10chromosomeGbar_A10:107942661..107942937 +
D10chromosomeD10:63946483..63946778 +
A10chromosomeA10:109328765..109329041 +
CM017632.1chromosomeCM017632.1:64110186..64110468 +
CM017619.1chromosomeCM017619.1:108501741..108502041 +
CM017658.1chromosomeCM017658.1:65211262..65211544 +
CM017710.1chromosomeCM017710.1:64868825..64869120 +
CM017697.1chromosomeCM017697.1:110875107..110875383 +
A10chromosomeA10:115594190..115594491 +
D10chromosomeD10:66106082..66106365 -
Chr10chromosomeChr10:125475006..125475300 +
Chr10chromosomeChr10:59994387..59994687 +
B_10chromosomeB_10:3285859..3286142 -
Chr_11chromosomeChr_11:42276984..42277266 +
Chr11chromosomeChr11:63578304..63578592 +
Chr11chromosomeChr11:47419977..47420390 +
Chr11chromosomeChr11:34572525..34572809 +
E10chromosomeE10:3444708..3445009 -
F10chromosomeF10:92526502..92526785 +
Chr10chromosomeChr10:1106286..1106573 +
Germplasm
Stock NameType
TM-1accession
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT569082.1DT569082.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A07N/A105.8NAU5227View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch20_Dt.10N/A112NAU5227View
30-153 x sGK9708, RIL (2016)AD_ch20_Dt.10N/A5.8NAU5227View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A47.1NAU5227View
5Yumian-1 x 7235, RIL (2015)AD_ch08_At.08N/A80.9NAU5227bView
6Yumian-1 x 7235, RIL (2015)AD_ch20_Dt.10N/A145.4NAU5227aView
7CCRI-35 x Yumian-1, RIL (2017)AD_ch20_Dt.10N/A118.45NAU5227View
Sequence
>NAU5227 ID=NAU5227; Name=NAU5227; organism=Gossypium hirsutum; type=genetic_marker; length=216bp
ACAACACAACCACAAACAGCTTGTATTCAGACCAAACCCTTCCTTTCAAT
CAGTTTAATGGAAGGCAAGTTAAGGCAAGTAACTGGCAAGCACAGGTTCA
ACAACAGCACCAGCAACAGCACCAGCACCAGCACCAGCACCAGATTCAGA
CTAGATTAAGAACAATGTTGTTGGTGGGAGACCACTGGGGCTACCACAAT
CTTCATGGCCTCCACT