NAU5125, NAU5125 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5125
Genbank IDDT561697
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
TM-1
Source SequenceDT561697.1
Source TypeEST
Repeat Motif(cac)8
PCR ConditionAnnealing temperature: 57
Primer 1NAU5125_F: ACAAACGCTGTCACTACGAA
Primer 2NAU5125_R: GCAATGGACTTTCAACCTCT
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT561697
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:67930416..67930664 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:105525328..105525561 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:64282207..64282452 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:103063335..103063568 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:2670277..2670525 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:132583228..132583476 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:2597040..2597288 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:3640974..3641222 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:51598488..51598736 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:64549062..64549310 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:97277874..97278107 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:67027923..67028167 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:109924428..109924661 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:67066837..67067085 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:108612725..108612958 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:68352938..68353186 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:107031454..107031687 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:65466572..65466808 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:102279995..102280228 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold41964supercontigscaffold41964:6913..7146 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:64880056..64880301 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:102237375..102237608 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:66090858..66091103 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:104569001..104569234 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:67174959..67175204 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:103947134..103947367 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:68808393..68808638 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:111048107..111048340 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:65696946..65697191 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:105052164..105052397 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:69363179..69363427 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:110593499..110593732 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:3093544..3093792 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:3123427..3123675 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:60406246..60406494 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:3145876..3146115 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:63447689..63447934 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:47939817..47940116 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:41296461..41296824 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:64927112..64927366 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:42078885..42079130 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:35531538..35531774 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:43657634..43657996 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:122604042..122604284 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:107586836..107587069 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:3580396..3580653 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr05chromosomeNAU5125:1..916 .
Chr05:61485016..61485931 +		n/a
Chr10chromosomeNAU5125:1..916 .
Chr10:4197586..4198501 +		n/a
Germplasm
Stock NameType
TM-1accession
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT561697.1DT561697.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch14_Dt.02N/A11.3NAU5125View
Sequence
>NAU5125 ID=NAU5125; Name=NAU5125; organism=Gossypium hirsutum; type=genetic_marker; length=249bp
ACAAACGCTGTCACTACGAAGGCGGAAACACCACCACCACCACCACCACC
ACCGCCGCCATCACCAACAACAAGAGCAGTAGCGTCAGCTTGAGTGGGGT
GACGGTGTCGGACGGTGGCGCGTTGAGCCAAACCCGTTGCGTCGACTTTG
ACTTTGACCTAAACTTGCCCGCTTTGTGCGAGTTGGAAATCAAAGATGGA
AGCAGATTTTGTCAAATCTATACAGAGCAAGAGGTTGAAAGTCCATTGC