NAU5045, NAU5045 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	NAU5045
Genbank ID	DT556124
Type	SSR
Species	Gossypium hirsutum
Germplasm	TM-1 TM-1
Source Sequence	DT556124.1
Source Type	EST
Repeat Motif	(ct)9
PCR Condition	Annealing temperature: 57
Primer 1	NAU5045_F: CGCTTCATCACTCTTCCTTT
Primer 2	NAU5045_R: CAATGCCCAATATGTGAAGA
Restriction Enzyme	EcoRI; NotI
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DT556124

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A05	chromosome	A05:86073474..86074092 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
D5_04	chromosome	D5_04:40864718..40865341 +	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
scaffold71.1	supercontig	scaffold71.1:420096..420724 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A05	chromosome	A05:78642949..78643567 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A05	chromosome	Ghir_A05:95991033..95991651 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A05	chromosome	A05:97482660..97483476 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A05	chromosome	A05:93993647..93994265 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
A05	chromosome	A05:97498696..97499314 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr04	chromosome	Chr04:40613568..40614194 +	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
B_02	chromosome	B_02:71550266..71550899 +	Gossypium anomalum (B1) genome NSF_v1	n/a
Chr12	chromosome	NAU5045:1..882 . Chr12:9954062..9955404 -		n/a
Chr9	chromosome	NAU5045:1..882 . Chr9:8977626..8978967 -		n/a

Publications


Year	Publication
2007	Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541.

Germplasm


Stock Name	Type
TM-1	accession
TM-1	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DT556124.1	DT556124.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	W10 x TM-1, F2:3 (2015)	AD_ch05_At.05	N/A	28.5	NAU5045	View

Sequence

>NAU5045 ID=NAU5045; Name=NAU5045; organism=Gossypium hirsutum; type=genetic_marker; length=165bp
CGCTTCATCACTCTTCCTTTTCCTCTTTTTCATTTTTATTATTTTTTCCC
TCTCTCTCTCTCTCTCTTTCCATGGCTTCTTCTTCATCTTCCTTTCACTT
CCCTTGACCTGTTCTTCATGGTTGATCTGATATGGGTTTTTGATTTCTTC
ACATATTGGGCATTG

Search form

NAU5045, NAU5045 (genetic_marker) Gossypium hirsutum