NAU4883, NAU4883 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU4883
AliasNAU4883=NAU3475
NAU3475
Genbank IDDT545093
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
TM-1
Source SequenceDT545093.1
Source TypeEST
Repeat Motif(cctctc)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU4883_F: CCTTCTTTTCCCCCTTTTAC
Primer 2NAU4883_R: CCTTTGACTTCGAGAAGAGG
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT545093
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:29975297..29975496 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:35084331..35084530 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:28466358..28466557 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:34103360..34103559 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:27146115..27146320 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:23873094..23873281 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:35103018..35103223 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:33292212..33292411 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:71700440..71700635 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:38766110..38766309 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:29192031..29192230 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:31929483..31929682 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:29336931..29337130 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:28593938..28594137 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:33803385..33803584 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:29163520..29163719 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:34979507..34979706 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:28799425..28799624 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:34060170..34060369 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6658supercontigscaffold6658:154127..154326 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6600supercontigscaffold6600:291514..291713 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6600supercontigscaffold6600:290398..290597 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:29035997..29036196 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:32933646..32933845 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:28768922..28769121 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:34510823..34511022 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:28729775..28729980 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:34097170..34097375 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:29166355..29166560 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:35261557..35261756 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:28832179..28832378 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:34328579..34328778 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:29841413..29841612 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:35423567..35423766 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:36449836..36450035 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:36148296..36148501 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:27281694..27281899 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:51302483..51302676 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:27757198..27757397 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:23382383..23382582 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:28886264..28886469 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:22485600..22485799 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:19917641..19917840 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:22790639..22790838 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:39754632..39754843 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:30930464..30930663 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:88907812..88908011 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
TM-1accession
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT545093.1DT545093.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A05N/A86.3NAU4883View
Sequence
>NAU4883 ID=NAU4883; Name=NAU4883; organism=Gossypium hirsutum; type=genetic_marker; length=206bp
CCTTCTTTTCCCCCTTTTACTCTAAAATCTACCTCTTCCATTTCTCTTCC
TCTCCCTCTCCCTCTCCCTCTCACTCGCTCTTCCCGCTTCCGCTCTACTC
ACGCGCCGTCTCCTAGGCCCATCGCCGCTTCCTTCTCCGCCGTTGAATCT
ACCACCTCCACCGACGGTCTTGGCAACTCCAAGACGCCTCTTCTCGAAGT
CAAAGG