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Marker Overview
| Name | NAU3404 |
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| Genbank ID | CO105129 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (ta)21 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU3404_F: GCAGGTAGATGTTATTATCAATGG |
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| Primer 2 | NAU3404_R: CCAACACTTTTTGGTACACCT |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | AD-genome wide Reference Map (2009) | AD_ch20_Dt.10 | N/A | 60 | NAU3404 | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch20_Dt.10 | N/A | 79.97 | NAU3404 | View |
| 3 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch10_At.10 | N/A | 0 | NAU3404 | View |
| 4 | Yumian-1 x 7235, RIL (2015) | AD_ch10_At.10 | N/A | 77.6 | NAU3404 | View |
| 5 | GX1135 x GX100-2, F2 (2013) | AD_ch10_At.10 | N/A | 42.9 | NAU3404 | View |
| 6 | GX1135 x GX100-2, RIL (2015) | AD_ch10_At.10 | N/A | 7.8 | NAU3404 | View |
| 7 | GX1135 x GX100-2, RIL (2016) | AD_ch10_At.10 | N/A | 7.8 | NAU3404 | View |
| 8 | 0-153 x sGK9708, RIL (2016) | AD_ch10_At.10 | N/A | 17.5 | NAU3404 | View |
| 9 | TM-1 x Hai-7124, BC1 (2007) | AD_ch20_Dt.10 | N/A | 66.2 | NAU3404-220 | View |
| 10 | TM-1 x Hai-7124, BC1 (2008) | AD_ch20_Dt.10 | N/A | 65.49 | NAU3404-220 | View |
| 11 | TM-1 x Hai-7124, BC1 (2012) | AD_ch20_Dt.10 | N/A | 47.7 | NAU3404-220 | View |
Sequence
>NAU3404 ID=NAU3404; Name=NAU3404; organism=Gossypium raimondii; type=genetic_marker; length=218bp
GCAGGTAGATGTTATTATCAATGGTAAAAGTGCCATTTATTTATATATAA
TTTTACCCTTACCTTAAATTTTCTGTTGACAAGTTGACATCTTGAGAAAT
GTAATTGCTTGCTTTATTTTATATATATATATATATATATATATATATAT
ATATATATATAAATTTTTTTGCTTTGTTTTTGGGTTAAAAGTTTTCTAGG
TGTACCAAAAAGTGTTGG
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