NAU3404, NAU3404 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3404
Genbank IDCO105129
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ta)21
PCR ConditionAnnealing temperature: 57
Primer 1NAU3404_F: GCAGGTAGATGTTATTATCAATGG
Primer 2NAU3404_R: CCAACACTTTTTGGTACACCT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO105129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:54194065..54194251 -
A10chromosomeA10:96492406..96492597 -
CM018224.1chromosomeCM018224.1:51842554..51842759 -
CM018211.1chromosomeCM018211.1:94054542..94054727 -
D5_10chromosomeD5_10:12871176..12871394 +
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:21302435..21302640 -
D10_10chromosomeD10_10:13411428..13411640 +
CM016623.1chromosomeCM016623.1:121080906..121081109 -
Dt_chr11chromosomeDt_chr11:56842762..56842948 -
At_chr11chromosomeAt_chr11:8585841..8586032 -
D10chromosomeD10:51623735..51623921 -
A10chromosomeA10:85993342..85993533 -
Ghir_D10chromosomeGhir_D10:54147837..54148022 -
Ghir_A10chromosomeGhir_A10:99820704..99820893 -
D10chromosomeD10:54195500..54195686 -
A10chromosomeA10:100818601..100818792 -
D10chromosomeD10:52844308..52844494 -
A10chromosomeA10:99952925..99953116 -
D10chromosomeD10:51137411..51137597 -
A10chromosomeA10:95035349..95035540 -
At10chromosomeAt10:90543167..90543352 -
At10chromosomeAt10:90536719..90536904 -
scaffold12103supercontigscaffold12103:14177..14382 +
scaffold1294supercontigscaffold1294:212631..212816 -
scaffold1294supercontigscaffold1294:206183..206368 -
Gbar_D10chromosomeGbar_D10:51835932..51836135 -
Gbar_A10chromosomeGbar_A10:94376587..94376772 -
D10chromosomeD10:52850003..52850208 -
A10chromosomeA10:96007270..96007455 -
CM017632.1chromosomeCM017632.1:51770988..51771170 -
CM017619.1chromosomeCM017619.1:95707495..95707684 -
CM017658.1chromosomeCM017658.1:54017979..54018163 -
CM017645.1chromosomeCM017645.1:103284073..103284258 -
CM017710.1chromosomeCM017710.1:52763809..52764018 +
CM017697.1chromosomeCM017697.1:97433152..97433339 -
D10chromosomeD10:54193480..54193666 -
A10chromosomeA10:102976930..102977121 -
Chr10chromosomeChr10:109551684..109551871 -
Chr10chromosomeChr10:103814660..103814867 -
Chr10chromosomeChr10:49473721..49473937 -
Chr11chromosomeChr11:50953770..50953969 -
chr11_1301966chromosomechr11_1301966:1158..1344 +
Chr_11chromosomeChr_11:34010261..34010594 -
Chr11chromosomeChr11:52226071..52226277 -
Chr11chromosomeChr11:36403264..36403456 -
Chr11chromosomeChr11:36267206..36267398 -
E10chromosomeE10:20475726..20475920 +
F10chromosomeF10:79074018..79074222 -
Chr11chromosomeNAU3404:1..648 .
Chr11:49857566..49858213 +
Chr11chromosomeNAU3404:1..648 .
Chr11:35181231..35181991 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A60NAU3404View
2Emian-22 x 3-79, BC1 (2011)AD_ch20_Dt.10N/A79.97NAU3404View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch10_At.10N/A0NAU3404View
4Yumian-1 x 7235, RIL (2015)AD_ch10_At.10N/A77.6NAU3404View
5GX1135 x GX100-2, F2 (2013)AD_ch10_At.10N/A42.9NAU3404View
6GX1135 x GX100-2, RIL (2015)AD_ch10_At.10N/A7.8NAU3404View
7GX1135 x GX100-2, RIL (2016)AD_ch10_At.10N/A7.8NAU3404View
80-153 x sGK9708, RIL (2016)AD_ch10_At.10N/A17.5NAU3404View
9TM-1 x Hai-7124, BC1 (2007)AD_ch20_Dt.10N/A66.2NAU3404-220View
10TM-1 x Hai-7124, BC1 (2008)AD_ch20_Dt.10N/A65.49NAU3404-220View
11TM-1 x Hai-7124, BC1 (2012)AD_ch20_Dt.10N/A47.7NAU3404-220View
Sequence
>NAU3404 ID=NAU3404; Name=NAU3404; organism=Gossypium raimondii; type=genetic_marker; length=218bp
GCAGGTAGATGTTATTATCAATGGTAAAAGTGCCATTTATTTATATATAA
TTTTACCCTTACCTTAAATTTTCTGTTGACAAGTTGACATCTTGAGAAAT
GTAATTGCTTGCTTTATTTTATATATATATATATATATATATATATATAT
ATATATATATAAATTTTTTTGCTTTGTTTTTGGGTTAAAAGTTTTCTAGG
TGTACCAAAAAGTGTTGG