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Marker Overview
| Name | NAU3052 |
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| Genbank ID | CO090909 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (ctt)6 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU3052_F: CGCAGCCTTTTCCTTTTT |
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| Primer 2 | NAU3052_R: ACAAGCAAGCGATTCATACA |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | JLZM x ZJXSLS, F2 (2008) | A_JZ_A09 | N/A | 98.7 | NAU3052 | View |
| 2 | AD-genome wide Reference Map (2009) | AD_ch09_At.09 | N/A | 182 | NAU3052 | View |
| 3 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch23_Dt.09 | N/A | 108.5 | NAU3052 | View |
| 4 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch23_Dt.09 | N/A | 30.6 | NAU3052 | View |
| 5 | GX1135 x GX100-2, F2 (2013) | AD_ch09_At.09 | N/A | 76.2 | NAU3052 | View |
| 6 | GX1135 x GX100-2, RIL (2015) | AD_ch09_At.09 | N/A | 131.4 | NAU3052 | View |
| 7 | GX1135 x GX100-2, RIL (2016) | AD_ch09_At.09 | N/A | 131.4 | NAU3052 | View |
| 8 | 0-153 x sGK9708, RIL (2016) | AD_ch23_Dt.09 | N/A | 135.2 | NAU3052 | View |
| 9 | SG 747 x Giza 75, BIL (2013) | AD_ch09_At.09 | N/A | 48.1 | NAU3052 | View |
| 10 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch23_Dt.09 | N/A | 44.7 | NAU3052 | View |
| 11 | TM-1 x Hai-7124, BC1 (2008) | AD_ch09_At.09 | N/A | 80.7 | NAU3052-180 | View |
| 12 | TM-1 x Hai-7124, BC1 (2007) | AD_ch09_At.09 | N/A | 80.7 | NAU3052-180 | View |
| 13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch09_At.09 | N/A | 84.7 | NAU3052-180 | View |
| 14 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch23_Dt.09 | N/A | 141.02 | NAU3052 | View |
Sequence
>NAU3052 ID=NAU3052; Name=NAU3052; organism=Gossypium raimondii; type=genetic_marker; length=182bp
CGCAGCCTTTTCCTTTTTCCTTCTTCTTCTTCTTCTTTTTCCTTTTTAAC
TTCTGTGGGTGTTGAAGAAGAAAGCTTTCAGCTTTAGGTGCCTGGTGATT
GTTACAACTCTGTTGTAGTCAGTTGTTTTACTGGGTATGTGTCTTTTTCC
TGTTCCAACACTTGTATGAATCGCTTGCTTGT
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