NAU2312, NAU2312 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2312
AliasNAU2312=NAU3225
NAU3225
Genbank IDDT049488
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT049488.1
Source TypeEST
Repeat MotifATAC(12)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2312_F: CAGGAGCCAAGAAGGAATTA
Primer 2NAU2312_R: TTGAGTTGCATCCTTTCTGA
Product Length201
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT049488
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:65813057..65813254 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:102243918..102244118 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:61947942..61948123 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:4977251..4977424 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:4868281..4868466 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:7080291..7080492 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:11890533..11890734 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:50755335..50755535 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:62841732..62841933 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:94528926..94529126 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:64647855..64648056 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:106889089..106889289 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:64776541..64776742 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:105784418..105784618 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:65984723..65984924 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:103955526..103955726 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:63109794..63109995 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:99212868..99213068 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5463supercontigscaffold5463:68871..69067 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold36673supercontigscaffold36673:38652..38833 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:62545845..62546026 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:63854172..63854353 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:64892788..64892989 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:100951891..100952103 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:66506193..66506370 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:108152211..108152395 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:63426211..63426416 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:102132282..102132482 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:66992981..66993182 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:107561473..107561673 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:6039371..6039567 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:5998579..5998763 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:58117927..58118100 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:6198681..6198845 +Gossypium anomalum (B1) genome NSF_v1n/a
chr05chromosomechr05:45994895..45995064 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:39730060..39730241 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:62639019..62639172 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:34079463..34079636 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:41818659..41818832 -Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:119149848..119150016 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr03chromosomeChr03:8097959..8098143 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT049488.1DT049488.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch14_Dt.02N/A20.62NAU2312View
2AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A197NAU2312View
3TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A37.61NAU2312View
4TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A88.8NAU2312View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A97.7NAU2312View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch03_At.03N/A62.6NAU2312View
7TM-1 x Hai-7124, BC1 (2007)AD_ch14_Dt.02N/A39.3NAU2312-175View
8TM-1 x Hai-7124, BC1 (2008)AD_ch14_Dt.02N/A40.13NAU2312-175View
9TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A72.5NAU2312-175View
10TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch14_Dt.02N/A73.8NAU2312aView
11TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch14_Dt.02N/A13NAU2312bView
12CCRI-35 x Yumian-1, RIL (2017)AD_ch03_At.03N/A71.99NAU2312View
13TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A88.81NAU2312View
14PD 94042 x (AD)4-08, F2 (2016)AD_ch14_Dt.02N/A80.6NAU2312View
Sequence
>NAU2312 ID=NAU2312; Name=NAU2312; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
CAGGAGCCAAGAAGGAATTAGGAGTTTATACATACATACATACATACATA
CATACATACATACATACATACATACAGACATATGTATATGTGTTACATCT
TCTTGACACTGTCAATAAATCCAATCAGTCAGTGATGTTGGAAAAAACAG
AAGCCGTTGCCCACTTCGCAATTGTAATCGTTCAGAAAGGATGCAACTCA
A