NAU2170, NAU2170 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2170
Genbank IDDT047139
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047139.1
Source TypeEST
Repeat MotifTCT(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2170_F: TCAAGTCTCAACAATATGTACC
Primer 2NAU2170_R: ACTCGGCCAATGATTTGTAT
Product Length242
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047139
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:54838827..54839068 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:51598250..51598492 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:8233764..8234006 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:9838354..9838597 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:46547238..46547483 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D12chromosomeD12:51211783..51212024 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:54073548..54073789 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:52902506..52902747 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:53704893..53705135 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:51926145..51926387 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold22487supercontigscaffold22487:173854..174096 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:50929536..50929778 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:52049868..52050110 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:52036454..52036696 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:54889593..54889835 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:52706026..52706268 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:54144891..54145132 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:100319373..100319616 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:107489573..107489816 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:49550325..49550567 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:78852615..78852857 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:49828786..49829026 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:38533821..38534066 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:36404877..36405122 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:27764720..27764945 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:34099481..34099726 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:103714903..103715145 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr8chromosomeNAU2170:6..550 .
Chr8:14921290..14921838 +		n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047139.1DT047139.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, F2:7 (2008)AD_ch26_Dt.12N/A0nau2170View
2AD-genome wide Reference Map (2009)AD_ch12_At.12N/A74nau2170View
3AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A158nau2170View
4Yumian-1 x T586, RIL (2006)AD_ch26_Dt.12N/A15.7nau2170View
5Yumian-1 x T586, RIL (2015)AD_ch26_Dt.12N/A72.1nau2170View
6TM-1 x Hai-7124, BC1 (2007)AD_ch12_At.12N/A64NAU2170-250View
7TM-1 x Hai-7124, BC1 (2008)AD_ch12_At.12N/A101.05NAU2170-250View
8TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A100.2NAU2170-250View
9TM-1 x Hai-7124, BC1 (2007)AD_ch26_Dt.12N/A78.1NAU2170-230View
10TM-1 x Hai-7124, BC1 (2008)AD_ch26_Dt.12N/A77.68NAU2170-230View
11TM-1 x Hai-7124, BC1 (2012)AD_ch26_Dt.12N/A80.4NAU2170-230View
12Yumian-1 x T586, RIL (2009)AD_ch26_Dt.12N/A15.7NAU2170/270y(C12,C26)View
Sequence
>NAU2170 ID=NAU2170; Name=NAU2170; organism=Gossypium hirsutum; type=genetic_marker; length=242bp
TCAAGTCTCAACAATATGTACCGGTTGATTAAAACAATTAAACTAATGGA
TTGAAAGAAAAAAAAAATGGAAAAATTAAGATGAAACAATAGAAATCAAC
TAAGAATTTTCAATCTTCTTCTTCTTCCGAAAAACAACCTCAGTATCGAG
ACCAAATGCATCAACTTTGCTCACCTCCAAAAGCTCCGATTCCTTAAACA
ACTCCACCAATGGTTGAACGCTATACAAATCATTGGCCGAGT